Plant
Callose biosynthesis regulates symplastic trafficking during root development.
Vatén A, Dettmer J, Wu S, Stierhof YD, Miyashima S, Yadav SR, Roberts CJ, Campilho A, Bulone V, Lichtenberger R, Lehesranta S,
Mähönen AP, Kim JY, Jokitalo E, Sauer N, Scheres B, Nakajima K, Carlsbecker A, Gallagher KL, Helariutta Y.
Dev Cell. 2011 Dec 13;21(6):1144-55.
MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, González AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR,
Green PJ, Sherrier DJ, Meyers BC.
Genes Dev. 2011 Dec 1;25(23):2540-53.
Biotechnological application of functional genomics towards plant-parasitic nematode control.
Li J, Todd TC, Lee J, Trick HN.
Plant Biotechnol J. 2011 Dec;9(9):936-44.
Regulation of auxin response by miR393-targeted transport inhibitor response protein 1 is involved in normal development in Arabidopsis.
Chen ZH, Bao ML, Sun YZ, Yang YJ, Xu XH, Wang JH, Han N, Bian HW, Zhu MY.
Plant Mol Biol. 2011 Dec;77(6):619-29.
Discovering numerical laws of plant microRNA by evolution.
Zhu R, Li X, Chen Q.
Biochem Biophys Res Commun. 2011 Nov 18;415(2):313-8.
Aluminum triggers broad changes in microRNA expression in rice roots.
Lima JC, Arenhart RA, Margis-Pinheiro M, Margis R.
Genet Mol Res. 2011 Nov 10;10(4):2817-32.
Binding of the cyclophilin 40 ortholog SQUINT to Hsp90 protein is required for SQUINT function in Arabidopsis.
Earley KW, Poethig RS.
J Biol Chem. 2011 Nov 4;286(44):38184-9.
Host-dependent suppression of RNA silencing mediated by the viral suppressor p19 in potato.
Ahn JW, Lee JS, Davarpanah SJ, Jeon JH, Park YI, Liu JR, Jeong WJ.
Planta. 2011 Nov;234(5):1065-72.
Oligogalacturonide-auxin antagonism does not require posttranscriptional gene silencing or stabilization of auxin response repressors in
Arabidopsis.
Savatin DV, Ferrari S, Sicilia F, De Lorenzo G.
Plant Physiol. 2011 Nov;157(3):1163-74.
Spatiotemporal analysis of copper homeostasis in Populus trichocarpa reveals an integrated molecular remodeling for a preferential
allocation of copper to plastocyanin in the chloroplasts of developing leaves.
Ravet K, Danford FL, Dihle A, Pittarello M, Pilon M.
Plant Physiol. 2011 Nov;157(3):1300-12.
Microarray profiling reveals microRNAs involving soybean resistance to Phytophthora sojae.
Guo N, Ye WW, Wu XL, Shen DY, Wang YC, Xing H, Dou DL.
Genome. 2011 Nov;54(11):954-8.
Recessive antimorphic alleles overcome functionally redundant loci to reveal TSO1 function in Arabidopsis flowers and meristems.
Sijacic P, Wang W, Liu Z.
PLoS Genet. 2011 Nov;7(11):e1002352.
[The role of miR319 in plant development regulation].
Luo M, Zhang ZM, Gao J, Zeng X, Pan GT.
Yi Chuan. 2011 Nov;33(11):1203-11.
Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass.
Chuck GS, Tobias C, Sun L, Kraemer F, Li C, Dibble D, Arora R, Bragg JN, Vogel JP, Singh S, Simmons BA, Pauly M, Hake S.
Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):17550-5.
Analysis of conserved microRNAs in floral tissues of sexual and apomictic Boechera species.
Amiteye S, Corral JM, Vogel H, Sharbel TF.
BMC Genomics. 2011 Oct 11;12:500.
Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa).
Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q.
J Exp Bot. 2011 Oct;62(14):4943-54.
Impact of down-regulation of starch branching enzyme IIb in rice by artificial microRNA- and hairpin RNA-mediated RNA silencing.
Butardo VM, Fitzgerald MA, Bird AR, Gidley MJ, Flanagan BM, Larroque O, Resurreccion AP, Laidlaw HK, Jobling SA, Morell MK,
Rahman S.
J Exp Bot. 2011 Oct;62(14):4927-41.
Salt and drought stresses induce the aberrant expression of microRNA genes in tobacco.
Frazier TP, Sun G, Burklew CE, Zhang B.
Mol Biotechnol. 2011 Oct;49(2):159-65.
Expression profiles of precursor and mature microRNAs under dehydration and high salinity shock in Populus euphratica.
Qin Y, Duan Z, Xia X, Yin W.
Plant Cell Rep. 2011 Oct;30(10):1893-907.
The control of developmental phase transitions in plants.
Huijser P, Schmid M.
Development. 2011 Oct;138(19):4117-29.
Tempo and mode of plant RNA virus escape from RNA interference-mediated resistance.
Lafforgue G, Martínez F, Sardanyés J, de la Iglesia F, Niu QW, Lin SS, Solé RV, Chua NH, Daròs JA, Elena SF.
J Virol. 2011 Oct;85(19):9686-95.
Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes.
Barrera-Figueroa BE, Gao L, Diop NN, Wu Z, Ehlers JD, Roberts PA, Close TJ, Zhu JK, Liu R.
BMC Plant Biol. 2011 Sep 17;11:127.
miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants.
Yang X, Li L.
Bioinformatics. 2011 Sep 15;27(18):2614-5.
Molecular insights into miRNA processing by Arabidopsis thaliana SERRATE.
Machida S, Chen HY, Adam Yuan Y.
Nucleic Acids Res. 2011 Sep 1;39(17):7828-36.
MiR398 and plant stress responses.
Zhu C, Ding Y, Liu H.
Physiol Plant. 2011 Sep;143(1):1-9.
Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of
grapevine microRNAs deposited in miRBase.
Wang C, Wang X, Kibet NK, Song C, Zhang C, Li X, Han J, Fang J.
Physiol Plant. 2011 Sep;143(1):64-81.
RNA-mediated silencing in Algae: biological roles and tools for analysis of gene function.
Cerutti H, Ma X, Msanne J, Repas T.
Eukaryot Cell. 2011 Sep;10(9):1164-72.
MicroRNAs as regulators of root development and architecture.
Khan GA, Declerck M, Sorin C, Hartmann C, Crespi M, Lelandais-Brière C.
Plant Mol Biol. 2011 Sep;77(1-2):47-58.
Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing.
Gonzalez-Ibeas D, Blanca J, Donaire L, Saladié M, Mascarell-Creus A, Cano-Delgado A, Garcia-Mas J, Llave C, Aranda MA.
BMC Genomics. 2011 Aug 3;12:393.
Plant tolerance to drought and salinity: stress regulating transcription factors and their functional significance in the cellular transcriptional
network.
Golldack D, Lüking I, Yang O.
Plant Cell Rep. 2011 Aug;30(8):1383-91.
Bioengineering RNA silencing across the life kingdoms.
Alvarez-Fernandez R, Lopez-Gomollon S, Lopez-Martinez AF, Nicolas FE.
Recent Pat Biotechnol. 2011 Aug;5(2):118-46.
Improved method for constructing plant amiRNA vectors with blue-white screening and MAGIC.
Yan H, Zhong X, Jiang S, Zhai C, Ma L.
Biotechnol Lett. 2011 Aug;33(8):1683-8.
Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis.
Devers EA, Branscheid A, May P, Krajinski F.
Plant Physiol. 2011 Aug;156(4):1990-2010.
HYL1 regulates the balance between adaxial and abaxial identity for leaf flattening via miRNA-mediated pathways.
Liu Z, Jia L, Wang H, He Y.
J Exp Bot. 2011 Aug;62(12):4367-81.
A mechanistic link between STM and CUC1 during Arabidopsis development.
Spinelli SV, Martin AP, Viola IL, Gonzalez DH, Palatnik JF.
Plant Physiol. 2011 Aug;156(4):1894-904.
Reversible male sterility in eggplant (Solanum melongena L.) by artificial microRNA-mediated silencing of general transcription factor
genes.
Toppino L, Kooiker M, Lindner M, Dreni L, Rotino GL, Kater MM.
Plant Biotechnol J. 2011 Aug;9(6):684-92.
Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome.
Radwan O, Liu Y, Clough SJ.
Mol Plant Microbe Interact. 2011 Aug;24(8):958-72.
Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing.
Wang T, Chen L, Zhao M, Tian Q, Zhang WH.
BMC Genomics. 2011 Jul 15;12:367.
Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems.
Calviño M, Bruggmann R, Messing J.
BMC Genomics. 2011 Jul 8;12:356.
Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia
mangium via de novo transcriptome sequencing.
Wong MM, Cannon CH, Wickneswari R.
BMC Genomics. 2011 Jul 5;12:342.
The role of the miR399-PHO2 module in the regulation of flowering time in response to different ambient temperatures in Arabidopsis
thaliana.
Kim W, Ahn HJ, Chiou TJ, Ahn JH.
Mol Cells. 2011 Jul;32(1):83-8.
Identification of potential microRNAs and their targets in Brassica rapa L.
Dhandapani V, Ramchiary N, Paul P, Kim J, Choi SH, Lee J, Hur Y, Lim YP.
Mol Cells. 2011 Jul;32(1):21-37.
[Bioinformatic prediction of conserved microRNAs and their target genes in eggplant (Solanum melongena L.)].
Zhang L, Chao JT, Cui MM, Chen YQ, Zong P, Sun YH.
Yi Chuan. 2011 Jul;33(7):776-84.
Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns.
Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T.
Plant J. 2011 Jul;67(2):232-46.
The microRNA miR393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates.
Robert-Seilaniantz A, MacLean D, Jikumaru Y, Hill L, Yamaguchi S, Kamiya Y, Jones JD.
Plant J. 2011 Jul;67(2):218-31.
Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions.
Wang H, Zhang X, Liu J, Kiba T, Woo J, Ojo T, Hafner M, Tuschl T, Chua NH, Wang XJ.
Plant J. 2011 Jul;67(2):292-304.
psRNATarget: a plant small RNA target analysis server.
Dai X, Zhao PX.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W155-9.
The role of epigenetic processes in controlling flowering time in plants exposed to stress.
Yaish MW, Colasanti J, Rothstein SJ.
J Exp Bot. 2011 Jul;62(11):3727-35.
Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica.
Li B, Qin Y, Duan H, Yin W, Xia X.
J Exp Bot. 2011 Jul;62(11):3765-79.
MicroRNAs in tomato plants.
Zuo J, Wang Y, Liu H, Ma Y, Ju Z, Zhai B, Fu D, Zhu Y, Luo Y, Zhu B.
Sci China Life Sci. 2011 Jul;54(7):599-605.
LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice.
Hu B, Zhu C, Li F, Tang J, Wang Y, Lin A, Liu L, Che R, Chu C.
Plant Physiol. 2011 Jul;156(3):1101-15.
The role of microRNAs in phosphorus deficiency signaling.
Kuo HF, Chiou TJ.
Plant Physiol. 2011 Jul;156(3):1016-24.
Phosphate utilization efficiency correlates with expression of low-affinity phosphate transporters and noncoding RNA, IPS1, in barley.
Huang CY, Shirley N, Genc Y, Shi B, Langridge P.
Plant Physiol. 2011 Jul;156(3):1217-29.
Global analysis of gene-level microRNA expression in Arabidopsis using deep sequencing data.
Yang X, Zhang H, Li L.
Genomics. 2011 Jul;98(1):40-6.
Identification of novel soybean microRNAs involved in abiotic and biotic stresses.
Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL,
Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R.
BMC Genomics. 2011 Jun 10;12:307.
Sculpting the meristem: the roles of miRNAs in plant stem cells.
Wang CY, Chen YQ, Liu Q.
Biochem Biophys Res Commun. 2011 Jun 10;409(3):363-6.
MicroRNA-mediated establishment of transcription factor gradients controlling developmental phase transitions.
Saleh O, Arazi T, Frank W.
Plant Signal Behav. 2011 Jun;6(6):873-7.
Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa).
Ding Y, Chen Z, Zhu C.
J Exp Bot. 2011 Jun;62(10):3563-73.
Wheat hybridization and polyploidization results in deregulation of small RNAs.
Kenan-Eichler M, Leshkowitz D, Tal L, Noor E, Melamed-Bessudo C, Feldman M, Levy AA.
Genetics. 2011 Jun;188(2):263-72.
Expression of artificial microRNAs in tomato confers efficient and stable virus resistance in a cell-autonomous manner.
Zhang X, Li H, Zhang J, Zhang C, Gong P, Ziaf K, Xiao F, Ye Z.
Transgenic Res. 2011 Jun;20(3):569-81.
Targeted manipulation of leaf form via local growth repression.
Malinowski R, Kasprzewska A, Fleming AJ.
Plant J. 2011 Jun;66(6):941-52.
Genetic engineering of woody plants: current and future targets in a stressful environment.
Osakabe Y, Kajita S, Osakabe K.
Physiol Plant. 2011 Jun;142(2):105-17.
Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis.
Kawashima CG, Matthewman CA, Huang S, Lee BR, Yoshimoto N, Koprivova A, Rubio-Somoza I, Todesco M, Rathjen T, Saito K,
Takahashi H, Dalmay T, Kopriva S.
Plant J. 2011 Jun;66(5):863-76.
LEUNIG and SEUSS co-repressors regulate miR172 expression in Arabidopsis flowers.
Grigorova B, Mara C, Hollender C, Sijacic P, Chen X, Liu Z.
Development. 2011 Jun;138(12):2451-6.
Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis.
Zhao M, Ding H, Zhu JK, Zhang F, Li WX.
New Phytol. 2011 Jun;190(4):906-15.
Signaling network in sensing phosphate availability in plants.
Chiou TJ, Lin SI.
Annu Rev Plant Biol. 2011 Jun;62:185-206.
Plant siRNAs from introns mediate DNA methylation of host genes.
Chen D, Meng Y, Yuan C, Bai L, Huang D, Lv S, Wu P, Chen LL, Chen M.
RNA. 2011 Jun;17(6):1012-24.
Non-cell-autonomous microRNA165 acts in a dose-dependent manner to regulate multiple differentiation status in the Arabidopsis root.
Miyashima S, Koi S, Hashimoto T, Nakajima K.
Development. 2011 Jun;138(11):2303-13.
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW,
Axtell MJ, Barker E, Barker MS, Bennetzen JL, Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M,
Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L, Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai
T, Hiwatashi Y, Ishikawa M, Iwata M, Karol KG, Koehler B, Kolukisaoglu U, Kubo M, Kurata T, Lalonde S, Li K, Li Y, Litt A, Lyons E,
Manning G, Maruyama T, Michael TP, Mikami K, Miyazaki S, Morinaga S, Murata T, Mueller-Roeber B, Nelson DR, Obara M, Oguri Y,
Olmstead RG, Onodera N, Petersen BL, Pils B, Prigge M, Rensing SA, Riaño-Pachón DM, Roberts AW, Sato Y, Scheller HV, Schulz B,
Schulz C, Shakirov EV, Shibagaki N, Shinohara N, Shippen DE, Sørensen I, Sotooka R, Sugimoto N, Sugita M, Sumikawa N, Tanurdzic
M, Theissen G, Ulvskov P, Wakazuki S, Weng JK, Willats WW, Wipf D, Wolf PG, Yang L, Zimmer AD, Zhu Q, Mitros T, Hellsten U, Loqué
D, Otillar R, Salamov A, Schmutz J, Shapiro H, Lindquist E, Lucas S, Rokhsar D, Grigoriev IV.
Science. 2011 May 20;332(6032):960-3.
Comparison of phenotypes produced in response to transient expression of genes encoded by four distinct begomoviruses in Nicotiana
benthamiana and their correlation with the levels of developmental miRNAs.
Amin I, Patil BL, Briddon RW, Mansoor S, Fauquet CM.
Virol J. 2011 May 19;8:238.
PlantMiRNAPred: efficient classification of real and pseudo plant pre-miRNAs.
Xuan P, Guo M, Liu X, Huang Y, Li W, Huang Y.
Bioinformatics. 2011 May 15;27(10):1368-76.
Specific impact of tobamovirus infection on the Arabidopsis small RNA profile.
Hu Q, Hollunder J, Niehl A, Kørner CJ, Gereige D, Windels D, Arnold A, Kuiper M, Vazquez F, Pooggin M, Heinlein M.
PLoS One. 2011 May 10;6(5):e19549.
Sequencing-based approaches reveal low ambient temperature-responsive and tissue-specific microRNAs in phalaenopsis orchid.
An FM, Hsiao SR, Chan MT.
PLoS One. 2011 May 6;6(5):e18937.
Arabidopsis Argonaute 2 regulates innate immunity via miRNA393(∗)-mediated silencing of a Golgi-localized SNARE gene, MEMB12.
Zhang X, Zhao H, Gao S, Wang WC, Katiyar-Agarwal S, Huang HD, Raikhel N, Jin H.
Mol Cell. 2011 May 6;42(3):356-66.
Domestication of transposable elements into MicroRNA genes in plants.
Li Y, Li C, Xia J, Jin Y.
PLoS One. 2011 May 3;6(5):e19212.
Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs.
Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G.
Genomics. 2011 May;97(5):282-93.
MicroRNAs in the shoot apical meristem of soybean.
Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL.
J Exp Bot. 2011 May;62(8):2495-506.
miR172 signals are incorporated into the miR156 signaling pathway at the SPL3/4/5 genes in Arabidopsis developmental transitions.
Jung JH, Seo PJ, Kang SK, Park CM.
Plant Mol Biol. 2011 May;76(1-2):35-45.
AtPV42a and AtPV42b redundantly regulate reproductive development in Arabidopsis thaliana.
Fang L, Hou X, Lee LY, Liu L, Yan X, Yu H.
PLoS One. 2011 Apr 20;6(4):e19033.
Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development.
Zhu H, Hu F, Wang R, Zhou X, Sze SH, Liou LW, Barefoot A, Dickman M, Zhang X.
Cell. 2011 Apr 15;145(2):242-56.
Developing a method for customized induction of flowering.
Yeoh CC, Balcerowicz M, Laurie R, Macknight R, Putterill J.
BMC Biotechnol. 2011 Apr 11;11:36.
MicroRNAs regulate the timing of embryo maturation in Arabidopsis.
Willmann MR, Mehalick AJ, Packer RL, Jenik PD.
Plant Physiol. 2011 Apr;155(4):1871-84.
Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factor.
Gou JY, Felippes FF, Liu CJ, Weigel D, Wang JW.
Plant Cell. 2011 Apr;23(4):1512-22.
Computational analysis of drought stress-associated miRNAs and miRNA co-regulation network in Physcomitrella patens.
Wan P, Wu J, Zhou Y, Xiao J, Feng J, Zhao W, Xiang S, Jiang G, Chen JY.
Genomics Proteomics Bioinformatics. 2011 Apr;9(1-2):37-44.
Transposable element origins of epigenetic gene regulation.
Lisch D, Bennetzen JL.
Curr Opin Plant Biol. 2011 Apr;14(2):156-61.
Dynamic regulation of H3K27 trimethylation during Arabidopsis differentiation.
Lafos M, Kroll P, Hohenstatt ML, Thorpe FL, Clarenz O, Schubert D.
PLoS Genet. 2011 Apr;7(4):e1002040.
Spatio-temporal expression of miRNAs in tomato tissues upon Cucumber mosaic virus and Tomato aspermy virus infections.
Feng J, Liu X, Lai L, Chen J.
Acta Biochim Biophys Sin (Shanghai). 2011 Apr;43(4):258-66.
Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual
oxygen availability.
Licausi F, Weits DA, Pant BD, Scheible WR, Geigenberger P, van Dongen JT.
New Phytol. 2011 Apr;190(2):442-56.
Balancing forces in the photoperiodic control of flowering.
Sanchez SE, Cagnola JI, Crepy M, Yanovsky MJ, Casal JJ.
Photochem Photobiol Sci. 2011 Apr;10(4):451-60.
Computational dissection of Arabidopsis smRNAome leads to discovery of novel microRNAs and short interfering RNAs associated with
transcription start sites.
Wang X, Laurie JD, Liu T, Wentz J, Liu XS.
Genomics. 2011 Apr;97(4):235-43.
Identification and analysis of seven H₂O₂-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica).
Li T, Li H, Zhang YX, Liu JY.
Nucleic Acids Res. 2011 Apr;39(7):2821-33.
Comparative analysis of non-autonomous effects of tasiRNAs and miRNAs in Arabidopsis thaliana.
de Felippes FF, Ott F, Weigel D.
Nucleic Acids Res. 2011 Apr;39(7):2880-9.
Divergent expression patterns of miR164 and CUP-SHAPED COTYLEDON genes in palms and other monocots: implication for the
evolution of meristem function in angiosperms.
Adam H, Marguerettaz M, Qadri R, Adroher B, Richaud F, Collin M, Thuillet AC, Vigouroux Y, Laufs P, Tregear JW, Jouannic S.
Mol Biol Evol. 2011 Apr;28(4):1439-54.
Genome-wide analysis of clustering patterns and flanking characteristics for plant microRNA genes.
Zhou M, Sun J, Wang QH, Song LQ, Zhao G, Wang HZ, Yang HX, Li X.
FEBS J. 2011 Apr;278(6):929-40.
A common set of developmental miRNAs are upregulated in Nicotiana benthamiana by diverse begomoviruses.
Amin I, Patil BL, Briddon RW, Mansoor S, Fauquet CM.
Virol J. 2011 Mar 29;8:143.
Differential miRNA expression in Rehmannia glutinosa plants subjected to continuous cropping.
Yang Y, Chen X, Chen J, Xu H, Li J, Zhang Z.
BMC Plant Biol. 2011 Mar 26;11:53.
MicroSyn: a user friendly tool for detection of microsynteny in a gene family.
Cai B, Yang X, Tuskan GA, Cheng ZM.
BMC Bioinformatics. 2011 Mar 18;12:79.
Identification and characterization of maize microRNAs involved in the very early stage of seed germination.
Wang L, Liu H, Li D, Chen H.
BMC Genomics. 2011 Mar 18;12:154.
Artificial microRNAs (amiRNAs) engineering - On how microRNA-based silencing methods have affected current plant silencing research.
Sablok G, Pérez-Quintero AL, Hassan M, Tatarinova TV, López C.
Biochem Biophys Res Commun. 2011 Mar 18;406(3):315-9.
Alternate approaches to repress endogenous microRNA activity in Arabidopsis thaliana.
Eamens AL, Wang MB.
Plant Signal Behav. 2011 Mar;6(3):349-59.
Intercellular communication during plant development.
Van Norman JM, Breakfield NW, Benfey PN.
Plant Cell. 2011 Mar;23(3):855-64.
The FT-like ZCN8 Gene Functions as a Floral Activator and Is Involved in Photoperiod Sensitivity in Maize.
Meng X, Muszynski MG, Danilevskaya ON.
Plant Cell. 2011 Mar;23(3):942-60.
The anaphase-promoting complex is a dual integrator that regulates both MicroRNA-mediated transcriptional regulation of cyclin B1 and
degradation of Cyclin B1 during Arabidopsis male gametophyte development.
Zheng B, Chen X, McCormick S.
Plant Cell. 2011 Mar;23(3):1033-46.
ARGONAUTE10 and ARGONAUTE1 regulate the termination of floral stem cells through two microRNAs in Arabidopsis.
Ji L, Liu X, Yan J, Wang W, Yumul RE, Kim YJ, Dinh TT, Liu J, Cui X, Zheng B, Agarwal M, Liu C, Cao X, Tang G, Chen X.
PLoS Genet. 2011 Mar;7(3):e1001358.
Computational analysis of miRNA targets in plants: current status and challenges.
Dai X, Zhuang Z, Zhao PX.
Brief Bioinform. 2011 Mar;12(2):115-21.
Genetic regulation by NLA and microRNA827 for maintaining nitrate-dependent phosphate homeostasis in arabidopsis.
Kant S, Peng M, Rothstein SJ.
PLoS Genet. 2011 Mar;7(3):e1002021.
Cytoplasmic male sterility-regulated novel microRNAs from maize.
Shen Y, Zhang Z, Lin H, Liu H, Chen J, Peng H, Cao M, Rong T, Pan G.
Funct Integr Genomics. 2011 Mar;11(1):179-91.
miRNA expression patterns of Triticum dicoccoides in response to shock drought stress.
Kantar M, Lucas SJ, Budak H.
Planta. 2011 Mar;233(3):471-84.
Stage and tissue-specific modulation of ten conserved miRNAs and their targets during somatic embryogenesis of Valencia sweet orange.
Wu XM, Liu MY, Ge XX, Xu Q, Guo WW.
Planta. 2011 Mar;233(3):495-505.
Investigation of the microRNAs in safflower seed, leaf, and petal by high-throughput sequencing.
Li H, Dong Y, Sun Y, Zhu E, Yang J, Liu X, Xue P, Xiao Y, Yang S, Wu J, Li X.
Planta. 2011 Mar;233(3):611-9.
The Populus class III HD ZIP, popREVOLUTA, influences cambium initiation and patterning of woody stems.
Robischon M, Du J, Miura E, Groover A.
Plant Physiol. 2011 Mar;155(3):1214-25.
Tobacco microRNAs prediction and their expression infected with Cucumber mosaic virus and Potato virus X.
Lang Q, Jin C, Lai L, Feng J, Chen S, Chen J.
Mol Biol Rep. 2011 Mar;38(3):1523-31.
Highly efficient virus resistance mediated by artificial microRNAs that target the suppressor of PVX and PVY in plants.
Ai T, Zhang L, Gao Z, Zhu CX, Guo X.
Plant Biol (Stuttg). 2011 Mar;13(2):304-16.
Evidence that XRN4, an Arabidopsis homolog of exoribonuclease XRN1, preferentially impacts transcripts with certain sequences or in
particular functional categories.
Rymarquis LA, Souret FF, Green PJ.
RNA. 2011 Mar;17(3):501-11.
The Populus Class III HD ZIP transcription factor POPCORONA affects cell differentiation during secondary growth of woody stems.
Du J, Miura E, Robischon M, Martinez C, Groover A.
PLoS One. 2011 Feb 28;6(2):e17458.
Discovery of barley miRNAs through deep sequencing of short reads.
Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U.
BMC Genomics. 2011 Feb 25;12:129.
Macromolecular composition of phloem exudate from white lupin (Lupinus albus L.).
Rodriguez-Medina C, Atkins CA, Mann AJ, Jordan ME, Smith PM.
BMC Plant Biol. 2011 Feb 22;11:36.
Characterization of statistical features for plant microRNA prediction.
Thakur V, Wanchana S, Xu M, Bruskiewich R, Quick WP, Mosig A, Zhu XG.
BMC Genomics. 2011 Feb 16;12:108.
Identification, characterization and expression analysis of MicroRNAs and their targets in the potato (Solanum tuberosum).
Xie F, Frazier TP, Zhang B.
Gene. 2011 Feb 15;473(1):8-22.
Evolution and functional diversification of MIRNA genes.
Cuperus JT, Fahlgren N, Carrington JC.
Plant Cell. 2011 Feb;23(2):431-42.
In silico identification and characterization of microRNAs and their putative target genes in Solanaceae plants.
Kim HJ, Baek KH, Lee BW, Choi D, Hur CG.
Genome. 2011 Feb;54(2):91-8.
miRNA control of vegetative phase change in trees.
Wang JW, Park MY, Wang LJ, Koo Y, Chen XY, Weigel D, Poethig RS.
PLoS Genet. 2011 Feb;7(2):e1002012.
MicroRNA534a control of BLADE-ON-PETIOLE 1 and 2 mediates juvenile-to-adult gametophyte transition in Physcomitrella patens.
Saleh O, Issman N, Seumel GI, Stav R, Samach A, Reski R, Frank W, Arazi T.
Plant J. 2011 Feb;65(4):661-74.
Microarray-based identification of tomato microRNAs and time course analysis of their response to Cucumber mosaic virus infection.
Lang QL, Zhou XC, Zhang XL, Drabek R, Zuo ZX, Ren YL, Li TB, Chen JS, Gao XL.
J Zhejiang Univ Sci B. 2011 Feb;12(2):116-25.
Over-expression of microRNA169 confers enhanced drought tolerance to tomato.
Zhang X, Zou Z, Gong P, Zhang J, Ziaf K, Li H, Xiao F, Ye Z.
Biotechnol Lett. 2011 Feb;33(2):403-9.
Over-expression of sly-miR156a in tomato results in multiple vegetative and reproductive trait alterations and partial phenocopy of the sft
mutant.
Zhang X, Zou Z, Zhang J, Zhang Y, Han Q, Hu T, Xu X, Liu H, Li H, Ye Z.
FEBS Lett. 2011 Jan 21;585(2):435-9.
A stele-enriched gene regulatory network in the Arabidopsis root.
Brady SM, Zhang L, Megraw M, Martinez NJ, Jiang E, Yi CS, Liu W, Zeng A, Taylor-Teeples M, Kim D, Ahnert S, Ohler U, Ware D,
Walhout AJ, Benfey PN.
Mol Syst Biol. 2011 Jan 18;7:459.
A novel approach for the construction of plant amiRNA expression vectors.
Yan H, Deng X, Cao Y, Huang J, Ma L, Zhao B.
J Biotechnol. 2011 Jan 10;151(1):9-14.
Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing.
Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS.
BMC Plant Biol. 2011 Jan 10;11:5.
Molecular insights into plant cell proliferation disturbance by Agrobacterium protein 6b.
Wang M, Soyano T, Machida S, Yang JY, Jung C, Chua NH, Yuan YA.
Genes Dev. 2011 Jan 1;25(1):64-76.
In silico analysis reveals that several tomato microRNA/microRNA* sequences exhibit propensity to bind to tomato leaf curl virus (ToLCV)
associated genomes and most of their encoded open reading frames (ORFs).
Naqvi AR, Choudhury NR, Mukherjee SK, Haq QM.
Plant Physiol Biochem. 2011 Jan;49(1):13-7.
Computational identification of microRNAs in apple expressed sequence tags and validation of their precise sequences by miR-RACE.
Yu H, Song C, Jia Q, Wang C, Li F, Nicholas KK, Zhang X, Fang J.
Physiol Plant. 2011 Jan;141(1):56-70.
Cell-to-cell trafficking of RNA and RNA silencing through plasmodesmata.
Hyun TK, Uddin MN, Rim Y, Kim JY.
Protoplasma. 2011 Jan;248(1):101-16.
Macromolecules in phloem exudates--a review.
Atkins CA, Smith PM, Rodriguez-Medina C.
Protoplasma. 2011 Jan;248(1):165-72.
Efficient silencing of endogenous microRNAs using artificial microRNAs in Arabidopsis thaliana.
Eamens AL, Agius C, Smith NA, Waterhouse PM, Wang MB.
Mol Plant. 2011 Jan;4(1):157-70.
PmiRKB: a plant microRNA knowledge base.
Meng Y, Gou L, Chen D, Mao C, Jin Y, Wu P, Chen M.
Nucleic Acids Res. 2011 Jan;39(Database issue):D181-7.
AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies.
Jiang Z, Liu X, Peng Z, Wan Y, Ji Y, He W, Wan W, Luo J, Guo H.
Nucleic Acids Res. 2011 Jan;39(Database issue):D1123-9.
Regulation of flowering time and floral patterning by miR172.
Zhu QH, Helliwell CA.
J Exp Bot. 2011 Jan;62(2):487-95.
miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in
Arabidopsis.
Wang L, Gu X, Xu D, Wang W, Wang H, Zeng M, Chang Z, Huang H, Cui X.
J Exp Bot. 2011 Jan;62(2):761-73.
osa-MIR393: a salinity- and alkaline stress-related microRNA gene.
Gao P, Bai X, Yang L, Lv D, Pan X, Li Y, Cai H, Ji W, Chen Q, Zhu Y.
Mol Biol Rep. 2011 Jan;38(1):237-42.
Bacteria-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks.
Zhang W, Gao S, Zhou X, Chellappan P, Chen Z, Zhou X, Zhang X, Fromuth N, Coutino G, Coffey M, Jin H.
Plant Mol Biol. 2011 Jan;75(1-2):93-105.
Vegetative phase change is mediated by a leaf-derived signal that represses the transcription of miR156.
Yang L, Conway SR, Poethig RS.
Development. 2011 Jan;138(2):245-9.
First survey of the wheat chromosome 5A composition through a next generation sequencing approach.
Vitulo N, Albiero A, Forcato C, Campagna D, Dal Pero F, Bagnaresi P, Colaiacovo M, Faccioli P, Lamontanara A, Šimková H,
Kubaláková M, Perrotta G, Facella P, Lopez L, Pietrella M, Gianese G, Doležel J, Giuliano G, Cattivelli L, Valle G, Stanca AM.
PLoS One. 2011;6(10):e26421.
Isolation of microRNAs that regulate seed dormancy and germination.
Kumar MB, Martin RC, Nonogaki H.
Methods Mol Biol. 2011;773:199-213.
Characterization of microRNAs identified in a table grapevine cultivar with validation of computationally predicted grapevine miRNAs by
miR-RACE.
Wang C, Shangguan L, Kibet KN, Wang X, Han J, Song C, Fang J.
PLoS One. 2011;6(7):e21259.
Regulation of gene expression in plants through miRNA inactivation.
Ivashuta S, Banks IR, Wiggins BE, Zhang Y, Ziegler TE, Roberts JK, Heck GR.
PLoS One. 2011;6(6):e21330.
High-throughput sequencing, characterization and detection of new and conserved cucumber miRNAs.
Martínez G, Forment J, Llave C, Pallás V, Gómez G.
PLoS One. 2011;6(5):e19523.
Overview of plant RNAi.
Watanabe Y.
Methods Mol Biol. 2011;744:1-11.
Gene function analysis by artificial microRNAs in Physcomitrella patens.
Khraiwesh B, Fattash I, Arif MA, Frank W.
Methods Mol Biol. 2011;744:57-79.
Computational prediction of plant miRNA targets.
Sun YH, Lu S, Shi R, Chiang VL.
Methods Mol Biol. 2011;744:175-86.
Detection of microRNAs in plants by in situ hybridisation.
Várallyay E, Havelda Z.
Methods Mol Biol. 2011;732:9-23.
Mimicry technology: suppressing small RNA activity in plants.
Rubio-Somoza I, Manavella PA.
Methods Mol Biol. 2011;732:131-7.
Target validation of plant microRNAs.
Llave C, Franco-Zorrilla JM, Solano R, Barajas D.
Methods Mol Biol. 2011;732:187-208.
Vectors and methods for hairpin RNA and artificial microRNA-mediated gene silencing in plants.
Eamens AL, Waterhouse PM.
Methods Mol Biol. 2011;701:179-97.
Identification of plant microRNAs using expressed sequence tag analysis.
Frazier TP, Zhang B.
Methods Mol Biol. 2011;678:13-25.