Plant
Integration of light- and brassinosteroid-signaling pathways by a GATA transcription factor in Arabidopsis.
Luo XM, Lin WH, Zhu S, Zhu JY, Sun Y, Fan XY, Cheng M, Hao Y, Oh E, Tian M, Liu L, Zhang M, Xie Q, Chong K, Wang ZY.
Dev Cell. 2010 Dec 14;19(6):872-83.
RNA editing of nuclear transcripts in Arabidopsis thaliana.
Meng Y, Chen D, Jin Y, Mao C, Wu P, Chen M.
BMC Genomics. 2010 Dec 2;11 Suppl 4:S12.
Target-align: a tool for plant microRNA target identification.
Xie F, Zhang B.
Bioinformatics. 2010 Dec 1;26(23):3002-3.
MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis.
Nodine MD, Bartel DP.
Genes Dev. 2010 Dec 1;24(23):2678-92.
Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation.
Lin SI, Santi C, Jobet E, Lacut E, El Kholti N, Karlowski WM, Verdeil JL, Breitler JC, Périn C, Ko SS, Guiderdoni E, Chiou TJ, Echeverria
M.
Plant Cell Physiol. 2010 Dec;51(12):2119-31.
Crucial roles of sucrose and microRNA399 in systemic signaling of P deficiency: a tale of two team players?
Liu J, Vance CP.
Plant Signal Behav. 2010 Dec;5(12):1556-60.
miR156-targeted and nontargeted SBP-box transcription factors act in concert to secure male fertility in Arabidopsis.
Xing S, Salinas M, Höhmann S, Berndtgen R, Huijser P.
Plant Cell. 2010 Dec;22(12):3935-50.
Transcriptome profiling of early developing cotton fiber by deep-sequencing reveals significantly differential expression of genes in a
fuzzless/lintless mutant.
Wang QQ, Liu F, Chen XS, Ma XJ, Zeng HQ, Yang ZM.
Genomics. 2010 Dec;96(6):369-76.
Characterization of plant miRNAs and small RNAs derived from potato spindle tuber viroid (PSTVd) in infected tomato.
Diermann N, Matoušek J, Junge M, Riesner D, Steger G.
Biol Chem. 2010 Dec;391(12):1379-90.
Functional characterization of plant small RNAs based on next-generation sequencing data.
Chen M, Meng Y, Gu H, Chen D.
Comput Biol Chem. 2010 Dec;34(5-6):308-12.
Computational identification of microRNAs and their targets from the expressed sequence tags of horsegram (Macrotyloma uniflorum
(Lam.) Verdc.).
Bhardwaj J, Mohammad H, Yadav SK.
J Struct Funct Genomics. 2010 Dec;11(4):233-40.
Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of
microRNAs in abiotic stress responses.
Shen J, Xie K, Xiong L.
Mol Genet Genomics. 2010 Dec;284(6):477-88.
Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane.
Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT.
BMC Plant Biol. 2010 Nov 24;10:260.
The use of microRNAs as reference genes for quantitative polymerase chain reaction in soybean.
Kulcheski FR, Marcelino-Guimaraes FC, Nepomuceno AL, Abdelnoor RV, Margis R.
Anal Biochem. 2010 Nov 15;406(2):185-92.
miSolRNA: A tomato micro RNA relational database.
Bazzini AA, Asís R, González V, Bassi S, Conte M, Soria M, Fernie AR, Asurmendi S, Carrari F.
BMC Plant Biol. 2010 Nov 8;10:240.
Patented applications of gene silencing in plants: manipulation of traits and phytopathogen resistance.
Alvarez-Fernandez R.
Recent Pat DNA Gene Seq. 2010 Nov 1;4(3):167-80.
Recent patents in RNA silencing in plants: constructs, methods and applications in plant biotechnology.
López-Gomollón S, Dalmay T.
Recent Pat DNA Gene Seq. 2010 Nov 1;4(3):155-66.
Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana.
Vidal EA, Tamayo KP, Gutierrez RA.
Wiley Interdiscip Rev Syst Biol Med. 2010 Nov-Dec;2(6):683-93.
Expression analysis of miRNAs and highly-expressed small RNAs in two rice subspecies and their reciprocal hybrids.
Chen F, He G, He H, Chen W, Zhu X, Liang M, Chen L, Deng XW.
J Integr Plant Biol. 2010 Nov;52(11):971-80.
[Identification of known microRNAs in root and leaf of maize by deep sequencing].
Chen J, Lin HJ, Pan GT, Zhang ZM, Zhang B, Shen YO, Qin C, Zhang Q, Zhao MJ.
Yi Chuan. 2010 Nov;32(11):1175-86.
TCP transcription factors regulate the activities of ASYMMETRIC LEAVES1 and miR164, as well as the auxin response, during
differentiation of leaves in Arabidopsis.
Koyama T, Mitsuda N, Seki M, Shinozaki K, Ohme-Takagi M.
Plant Cell. 2010 Nov;22(11):3574-88.
Specific down-regulation of PAL genes by artificial microRNAs in Populus trichocarpa.
Shi R, Yang C, Lu S, Sederoff R, Chiang VL.
Planta. 2010 Nov;232(6):1281-8.
Identification and characterization of microRNAs and their target genes in tobacco (Nicotiana tabacum).
Frazier TP, Xie F, Freistaedter A, Burklew CE, Zhang B.
Planta. 2010 Nov;232(6):1289-308.
Overexpression of microRNA395c or 395e affects differently the seed germination of Arabidopsis thaliana under stress conditions.
Kim JY, Lee HJ, Jung HJ, Maruyama K, Suzuki N, Kang H.
Planta. 2010 Nov;232(6):1447-54.
MicroRNA gene regulation cascades during early stages of plant development.
Nonogaki H.
Plant Cell Physiol. 2010 Nov;51(11):1840-6.
LOST MERISTEMS genes regulate cell differentiation of central zone descendants in Arabidopsis shoot meristems.
Schulze S, Schäfer BN, Parizotto EA, Voinnet O, Theres K.
Plant J. 2010 Nov;64(4):668-78.
Comparative transcriptomics for mangrove species: an expanding resource.
Dassanayake M, Haas JS, Bohnert HJ, Cheeseman JM.
Funct Integr Genomics. 2010 Nov;10(4):523-32.
Regulation of barley miRNAs upon dehydration stress correlated with target gene expression.
Kantar M, Unver T, Budak H.
Funct Integr Genomics. 2010 Nov;10(4):493-507.
WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining MicroRNA and trans-acting small interfering
RNA accumulation in rice.
Abe M, Yoshikawa T, Nosaka M, Sakakibara H, Sato Y, Nagato Y, Itoh J.
Plant Physiol. 2010 Nov;154(3):1335-46.
Computational identification of citrus microRNAs and target analysis in citrus expressed sequence tags.
Song C, Jia Q, Fang J, Li F, Wang C, Zhang Z.
Plant Biol (Stuttg). 2010 Nov;12(6):927-34.
A highly efficient method for construction of rice artificial MicroRNA vectors.
Wang X, Yang Y, Yu C, Zhou J, Cheng Y, Yan C, Chen J.
Mol Biotechnol. 2010 Nov;46(3):211-8.
On reconciling the interactions between APETALA2, miR172 and AGAMOUS with the ABC model of flower development.
Wollmann H, Mica E, Todesco M, Long JA, Weigel D.
Development. 2010 Nov;137(21):3633-42.
MicroRNA profiling of tomato leaf curl New Delhi virus (tolcndv) infected tomato leaves indicates that deregulation of mir159/319 and
mir172 might be linked with leaf curl disease.
Naqvi AR, Haq QM, Mukherjee SK.
Virol J. 2010 Oct 25;7:281.
A computational-based update on microRNAs and their targets in barley (Hordeum vulgare L.).
Colaiacovo M, Subacchi A, Bagnaresi P, Lamontanara A, Cattivelli L, Faccioli P.
BMC Genomics. 2010 Oct 22;11:595.
Plant virus-mediated induction of miR168 is associated with repression of ARGONAUTE1 accumulation.
Várallyay E, Válóczi A, Agyi A, Burgyán J, Havelda Z.
EMBO J. 2010 Oct 20;29(20):3507-19.
Analysis of phosphorus-deficient responsive miRNAs and cis-elements from soybean (Glycine max L.).
Zeng HQ, Zhu YY, Huang SQ, Yang ZM.
J Plant Physiol. 2010 Oct 15;167(15):1289-97
Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome.
Laubinger S, Zeller G, Henz SR, Buechel S, Sachsenberg T, Wang JW, Rätsch G, Weigel D.
Proc Natl Acad Sci U S A. 2010 Oct 12;107(41):17466-73.
Reciprocal regulation among miR395, APS and SULTR2;1 in Arabidopsis thaliana.
Liang G, Yu D.
Plant Signal Behav. 2010 Oct;5(10):1257-9.
microRNA access to the target helicases from rice.
Umate P, Tuteja N.
Plant Signal Behav. 2010 Oct;5(10):1171-5.
A set of miRNAs from Brassica napus in response to sulphate deficiency and cadmium stress.
Huang SQ, Xiang AL, Che LL, Chen S, Li H, Song JB, Yang ZM.
Plant Biotechnol J. 2010 Oct;8(8):887-99.
Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa.
Zhou L, Liu Y, Liu Z, Kong D, Duan M, Luo L.
J Exp Bot. 2010 Oct;61(15):4157-68.
Prediction and validation of conservative microRNAs of Solanum tuberosum L.
Yang W, Liu X, Zhang J, Feng J, Li C, Chen J.
Mol Biol Rep. 2010 Oct;37(7):3081-7.
The microRNA159-regulated GAMYB-like genes inhibit growth and promote programmed cell death in Arabidopsis.
Alonso-Peral MM, Li J, Li Y, Allen RS, Schnippenkoetter W, Ohms S, White RG, Millar AA.
Plant Physiol. 2010 Oct;154(2):757-71.
Rapid assessment of gene function in the circadian clock using artificial microRNA in Arabidopsis mesophyll protoplasts.
Kim J, Somers DE.
Plant Physiol. 2010 Oct;154(2):611-21.
The past, present, and future of vegetative phase change.
Poethig RS.
Plant Physiol. 2010 Oct;154(2):541-4
Quantitative trait loci, epigenetics, sugars, and microRNAs: quaternaries in phosphate acquisition and use.
Vance CP.
Plant Physiol. 2010 Oct;154(2):582-8.
Identification and characterization of a novel miR159 target not related to MYB in tomato.
Buxdorf K, Hendelman A, Stav R, Lapidot M, Ori N, Arazi T.
Planta. 2010 Oct;232(5):1009-22.
miRNAs in the biogenesis of trans-acting siRNAs in higher plants.
Allen E, Howell MD.
Semin Cell Dev Biol. 2010 Oct;21(8):798-804.
MicroRNAs with macro-effects on plant stress responses.
Sunkar R.
Semin Cell Dev Biol. 2010 Oct;21(8):805-11.
Expression of microRNAs and its regulation in plants.
Xie Z, Khanna K, Ruan S.
Semin Cell Dev Biol. 2010 Oct;21(8):790-7.
Plant microRNAs at a glance.
Chen X.
Semin Cell Dev Biol. 2010 Oct;21(8):781.
Plant microRNAs: an insight into their gene structures and evolution.
Tang G.
Semin Cell Dev Biol. 2010 Oct;21(8):782-9.
Structure and RNA interactions of the plant MicroRNA processing-associated protein HYL1.
Rasia RM, Mateos J, Bologna NG, Burdisso P, Imbert L, Palatnik JF, Boisbouvier J.
Biochemistry. 2010 Sep 28;49(38):8237-9.
Small RNAs are on the move.
Chitwood DH, Timmermans MC.
Nature. 2010 Sep 23;467(7314):415-9.
Role of small RNAs in host-microbe interactions.
Katiyar-Agarwal S, Jin H.
Annu Rev Phytopathol. 2010 Sep 8;48:225-46.
Enhanced seed carotenoid levels and branching in transgenic Brassica napus expressing the Arabidopsis miR156b gene.
Wei S, Yu B, Gruber MY, Khachatourians GG, Hegedus DD, Hannoufa A.
J Agric Food Chem. 2010 Sep 8;58(17):9572-8.
Global analysis of microRNA in Arabidopsis in response to phosphate starvation as studied by locked nucleic acid-based microarrays.
Lundmark M, Kørner CJ, Nielsen TH.
Physiol Plant. 2010 Sep 1;140(1):57-68.
siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis.
Yu B, Bi L, Zhai J, Agarwal M, Li S, Wu Q, Ding SW, Meyers BC, Vaucheret H, Chen X.
Nucleic Acids Res. 2010 Sep 1;38(17):5844-50.
Conserved miRNAs and their targets identified in lettuce (Lactuca) by EST analysis.
Han Y, Zhu B, Luan F, Zhu H, Shao Y, Chen A, Lu C, Luo Y.
Gene. 2010 Sep 1;463(1-2):1-7.
MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce.
Yakovlev IA, Fossdal CG, Johnsen Ø.
New Phytol. 2010 Sep;187(4):1154-69.
Natural diversity in flowering responses of Arabidopsis thaliana caused by variation in a tandem gene array.
Rosloski SM, Jali SS, Balasubramanian S, Weigel D, Grbic V.
Genetics. 2010 Sep;186(1):263-76.
MicroRNA171c-targeted SCL6-II, SCL6-III, and SCL6-IV genes regulate shoot branching in Arabidopsis.
Wang L, Mai YX, Zhang YC, Luo Q, Yang HQ.
Mol Plant. 2010 Sep;3(5):794-806.
Cucumber mosaic virus 2b protein inhibits RNA silencing pathways in green alga Chlamydomonas reinhardtii.
Ahn JW, Yin CJ, Liu JR, Jeong WJ.
Plant Cell Rep. 2010 Sep;29(9):967-75.
Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor
circinelloides.
Nicolas FE, Moxon S, de Haro JP, Calo S, Grigoriev IV, Torres-Martínez S, Moulton V, Ruiz-Vázquez RM, Dalmay T.
Nucleic Acids Res. 2010 Sep;38(16):5535-41.
High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism.
Meng Y, Gou L, Chen D, Wu P, Chen M.
J Exp Bot. 2010 Sep;61(14):3833-7.
22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants.
Chen HM, Chen LT, Patel K, Li YH, Baulcombe DC, Wu SH.
Proc Natl Acad Sci U S A. 2010 Aug 24;107(34):15269-74.
RNA silencing amplification in plants: size matters.
Schwab R, Voinnet O.
Proc Natl Acad Sci U S A. 2010 Aug 24;107(34):14945-6.
The epigenetic control of the Athila family of retrotransposons in Arabidopsis.
Slotkin RK.
Epigenetics. 2010 Aug 16;5(6):483-90.
RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome.
Severin AJ, Woody JL, Bolon YT, Joseph B, Diers BW, Farmer AD, Muehlbauer GJ, Nelson RT, Grant D, Specht JE, Graham MA, Cannon
SB, May GD, Vance CP, Shoemaker RC.
BMC Plant Biol. 2010 Aug 5;10:160.
Characterisation of microRNAs from apple (Malus domestica 'Royal Gala') vascular tissue and phloem sap.
Varkonyi-Gasic E, Gould N, Sandanayaka M, Sutherland P, MacDiarmid RM.
BMC Plant Biol. 2010 Aug 4;10:159.
Why is ethylene involved in selective promotion of female flower development in cucumber?
Sun JJ, Li F, Li X, Liu XC, Rao GY, Luo JC, Wang DH, Xu ZH, Bai SN.
Plant Signal Behav. 2010 Aug;5(8):1052-6.
Arabidopsis stromal 70-kDa heat shock proteins are essential for chloroplast development.
Latijnhouwers M, Xu XM, Møller SG.
Planta. 2010 Aug;232(3):567-78.
MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicity.
Valdés-López O, Yang SS, Aparicio-Fabre R, Graham PH, Reyes JL, Vance CP, Hernández G.
New Phytol. 2010 Aug;187(3):805-18.
Tapping RNA silencing pathways for plant biotechnology.
Frizzi A, Huang S.
Plant Biotechnol J. 2010 Aug;8(6):655-77.
Misexpression of miR482, miR1512, and miR1515 increases soybean nodulation.
Li H, Deng Y, Wu T, Subramanian S, Yu O.
Plant Physiol. 2010 Aug;153(4):1759-70.
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis.
Cuperus JT, Carbonell A, Fahlgren N, Garcia-Ruiz H, Burke RT, Takeda A, Sullivan CM, Gilbert SD, Montgomery TA, Carrington JC.
Nat Struct Mol Biol. 2010 Aug;17(8):997-1003.
Four abiotic stress-induced miRNA families differentially regulated in the embryogenic and non-embryogenic callus tissues of Larix
leptolepis.
Zhang S, Zhou J, Han S, Yang W, Li W, Wei H, Li X, Qi L.
Biochem Biophys Res Commun. 2010 Jul 30;398(3):355-60.
In vitro assembly of plant RNA-induced silencing complexes facilitated by molecular chaperone HSP90.
Iki T, Yoshikawa M, Nishikiori M, Jaudal MC, Matsumoto-Yokoyama E, Mitsuhara I, Meshi T, Ishikawa M.
Mol Cell. 2010 Jul 30;39(2):282-91.
A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana.
Todesco M, Rubio-Somoza I, Paz-Ares J, Weigel D.
PLoS Genet. 2010 Jul 22;6(7):e1001031.
RNA-mediated trans-communication can establish paramutation at the b1 locus in maize.
Arteaga-Vazquez M, Sidorenko L, Rabanal FA, Shrivistava R, Nobuta K, Green PJ, Meyers BC, Chandler VL.
Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):12986-91.
Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with
complexity.
Lang D, Weiche B, Timmerhaus G, Richardt S, Riaño-Pachón DM, Corrêa LG, Reski R, Mueller-Roeber B, Rensing SA.
Genome Biol Evol. 2010 Jul 19;2:488-503.
Identification of microRNAs and their targets in switchgrass, a model biofuel plant species.
Matts J, Jagadeeswaran G, Roe BA, Sunkar R.
J Plant Physiol. 2010 Jul 15;167(11):896-904.
Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata).
Song C, Wang C, Zhang C, Korir NK, Yu H, Ma Z, Fang J.
BMC Genomics. 2010 Jul 13;11:431.
Plant microRNAs and their role in defense against viruses: a bioinformatics approach.
Pérez-Quintero AL, Neme R, Zapata A, López C.
BMC Plant Biol. 2010 Jul 1;10:138.
Profiling of cold-stress-responsive miRNAs in rice by microarrays.
Lv DK, Bai X, Li Y, Ding XD, Ge Y, Cai H, Ji W, Wu N, Zhu YM.
Gene. 2010 Jul 1;459(1-2):39-47.
Identification of conserved micro-RNAs and their target transcripts in opium poppy (Papaver somniferum L.).
Unver T, Parmaksiz I, Dündar E.
Plant Cell Rep. 2010 Jul;29(7):757-69.
Temporal control of trichome distribution by microRNA156-targeted SPL genes in Arabidopsis thaliana.
Yu N, Cai WJ, Wang S, Shan CM, Wang LJ, Chen XY.
Plant Cell. 2010 Jul;22(7):2322-35.
Identification and characterization of microRNAs and their targets in the bioenergy plant switchgrass (Panicum virgatum).
Xie F, Frazier TP, Zhang B.
Planta. 2010 Jul;232(2):417-34.
Suppression of microRNA accumulation via RNA interference in Arabidopsis thaliana.
Vaistij FE, Elias L, George GL, Jones L.
Plant Mol Biol. 2010 Jul;73(4-5):391-7.
Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.).
Xin M, Wang Y, Yao Y, Xie C, Peng H, Ni Z, Sun Q.
BMC Plant Biol. 2010 Jun 24;10:123.
Identification and characterization of conserved microRNAs and their target genes in wheat (Triticum aestivum).
Yin ZJ, Shen FF.
Genet Mol Res. 2010 Jun 22;9(2):1186-96.
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.
Bonnet E, He Y, Billiau K, Van de Peer Y.
Bioinformatics. 2010 Jun 15;26(12):1566-8.
A nematode demographics assay in transgenic roots reveals no significant impacts of the Rhg1 locus LRR-Kinase on soybean cyst
nematode resistance.
Melito S, Heuberger AL, Cook D, Diers BW, MacGuidwin AE, Bent AF.
BMC Plant Biol. 2010 Jun 9;10:104.
MiR-RACE, a new efficient approach to determine the precise sequences of computationally identified trifoliate orange (Poncirus trifoliata)
microRNAs.
Song C, Fang J, Wang C, Guo L, Nicholas KK, Ma Z.
PLoS One. 2010 Jun 7;5(6):e10861.
Transcriptome-wide identification of microRNA targets in rice.
Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, Jagadeeswaran G, Axtell MJ, Zhang W, Sunkar R.
Plant J. 2010 Jun 1;62(5):742-59.
Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis.
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J.
Plant J. 2010 Jun 1;62(6):960-76.
A role for ABIL3 in plant cell morphogenesis.
Jörgens CI, Grünewald N, Hülskamp M, Uhrig JF.
Plant J. 2010 Jun 1;62(6):925-35.
MicroRNA395 mediates regulation of sulfate accumulation and allocation in Arabidopsis thaliana.
Liang G, Yang F, Yu D.
Plant J. 2010 Jun 1;62(6):1046-57.
Small RNAs in angiosperms: sequence characteristics, distribution and generation.
Chen D, Meng Y, Ma X, Mao C, Bai Y, Cao J, Gu H, Wu P, Chen M.
Bioinformatics. 2010 Jun 1;26(11):1391-4.
Small RNAs in angiosperm gametophytes: from epigenetics to gamete development.
Le Trionnaire G, Twell D.
Genes Dev. 2010 Jun 1;24(11):1081-5.
[The roles of RNA silencing in plant biotic stress]
Xie ZH.
Yi Chuan. 2010 Jun;32(6):561-70.
Computational identification of miRNAs and their target genes from expressed sequence tags of tea (Camellia sinensis).
Prabu GR, Mandal AK.
Genomics Proteomics Bioinformatics. 2010 Jun;8(2):113-21.
Virus-based microRNA expression for gene functional analysis in plants.
Tang Y, Wang F, Zhao J, Xie K, Hong Y, Liu Y.
Plant Physiol. 2010 Jun;153(2):632-41.
MicroRNA402 affects seed germination of Arabidopsis thaliana under stress conditions via targeting DEMETER-LIKE Protein3 mRNA.
Kim JY, Kwak KJ, Jung HJ, Lee HJ, Kang H.
Plant Cell Physiol. 2010 Jun;51(6):1079-83.
Classification and quantification of leaf curvature.
Liu Z, Jia L, Mao Y, He Y.
J Exp Bot. 2010 Jun;61(10):2757-67.
Overexpression of Osta-siR2141 caused abnormal polarity establishment and retarded growth in rice.
Wang J, Gao X, Li L, Shi X, Zhang J, Shi Z.
J Exp Bot. 2010 Jun;61(6):1885-95.
Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice.
Jiao Y, Wang Y, Xue D, Wang J, Yan M, Liu G, Dong G, Zeng D, Lu Z, Zhu X, Qian Q, Li J.
Nat Genet. 2010 Jun;42(6):541-4.
Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate.
Carlsbecker A, Lee JY, Roberts CJ, Dettmer J, Lehesranta S, Zhou J, Lindgren O, Moreno-Risueno MA, Vatén A, Thitamadee S,
Campilho A, Sebastian J, Bowman JL, Helariutta Y, Benfey PN.
Nature. 2010 May 20;465(7296):316-21.
Developmental biology: Roots respond to an inner calling.
Scheres B.
Nature. 2010 May 20;465(7296):299-300.
Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis.
Liang C, Zhang X, Zou J, Xu D, Su F, Ye N.
PLoS One. 2010 May 19;5(5):e10698.
Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells.
Molnar A, Melnyk CW, Bassett A, Hardcastle TJ, Dunn R, Baulcombe DC.
Science. 2010 May 14;328(5980):872-5.
Molecular biology. Small RNA makes its move.
Martienssen R.
Science. 2010 May 14;328(5980):834-5.
Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing.
Yang SW, Chen HY, Yang J, Machida S, Chua NH, Yuan YA.
Structure. 2010 May 12;18(5):594-605.
A new mechanism in plant engineering: the potential roles of microRNAs in molecular breeding for crop improvement.
Liu Q, Chen YQ.
Biotechnol Adv. 2010 May-Jun;28(3):301-7.
ragged seedling2 Encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves.
Douglas RN, Wiley D, Sarkar A, Springer N, Timmermans MC, Scanlon MJ.
Plant Cell. 2010 May;22(5):1441-51.
microRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis.
Beauclair L, Yu A, Bouché N.
Plant J. 2010 May;62(3):454-62.
The role of floral organs in carpels, an Arabidopsis loss-of-function mutation in MicroRNA160a, in organogenesis and the mechanism
regulating its expression.
Liu X, Huang J, Wang Y, Khanna K, Xie Z, Owen HA, Zhao D.
Plant J. 2010 May;62(3):416-28.
microRNA, seeds, and Darwin?: diverse function of miRNA in seed biology and plant responses to stress.
Martin RC, Liu PP, Goloviznina NA, Nonogaki H.
J Exp Bot. 2010 May;61(9):2229-34.
Methodological framework for functional characterization of plant microRNAs.
Chen M, Meng Y, Mao C, Chen D, Wu P.
J Exp Bot. 2010 May;61(9):2271-80.
[Spatiotemporal regulation of small RNA function in plants]
Watanabe Y.
Seikagaku. 2010 May;82(5):397-402.
Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis.
Lee H, Yoo SJ, Lee JH, Kim W, Yoo SK, Fitzgerald H, Carrington JC, Ahn JH.
Nucleic Acids Res. 2010 May;38(9):3081-93.
Sequence variation and selection of small RNAs in domesticated rice.
Wang Y, Shen D, Bo S, Chen H, Zheng J, Zhu QH, Cai D, Helliwell C, Fan L.
BMC Evol Biol. 2010 Apr 30;10:119.
Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type.
Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X.
BMC Genomics. 2010 Apr 17;11:246.
Identification of novel miRNAs and miRNA dependent developmental shifts of gene expression in Arabidopsis thaliana.
Zhan S, Lukens L.
PLoS One. 2010 Apr 13;5(4):e10157.
Phloem small RNAs, nutrient stress responses, and systemic mobility.
Buhtz A, Pieritz J, Springer F, Kehr J.
BMC Plant Biol. 2010 Apr 13;10:64.
Identification of microRNAs involved in pathogen-associated molecular pattern-triggered plant innate immunity.
Li Y, Zhang Q, Zhang J, Wu L, Qi Y, Zhou JM.
Plant Physiol. 2010 Apr;152(4):2222-31.
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively
regulating lateral root growth.
Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, Nussaume L, Crespi MD, Maizel A.
Plant Cell. 2010 Apr;22(4):1104-17.
Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus.
Ma Z, Coruh C, Axtell MJ.
Plant Cell. 2010 Apr;22(4):1090-103.
MicroRNA evolution in the genus Arabidopsis.
Hofmann NR.
Plant Cell. 2010 Apr;22(4):994.
MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana.
Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC.
Plant Cell. 2010 Apr;22(4):1074-89.
Post-transcriptional gene regulation of salinity and drought responses by plant microRNAs.
Covarrubias AA, Reyes JL.
Plant Cell Environ. 2010 Apr;33(4):481-9.
RNAi-mediated down-regulation of DCL1 and AGO1 induces developmental changes in resynthesized Arabidopsis allotetraploids.
Lackey E, Ng DW, Chen ZJ.
New Phytol. 2010 Apr;186(1):207-15.
Over-expression of osa-MIR396c decreases salt and alkali stress tolerance.
Gao P, Bai X, Yang L, Lv D, Li Y, Cai H, Ji W, Guo D, Zhu Y.
Planta. 2010 Apr;231(5):991-1001.
Through a generation darkly: small RNAs in the gametophyte.
Grant-Downton RT.
Biochem Soc Trans. 2010 Apr;38(2):617-21.
Short RNAs in tomato.
Dalmay T.
J Integr Plant Biol. 2010 Apr;52(4):388-92.
Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application.
Unver T, Bakar M, Shearman RC, Budak H.
Mol Genet Genomics. 2010 Apr;283(4):397-413.
MicroRNA-mediated signaling involved in plant root development.
Meng Y, Ma X, Chen D, Wu P, Chen M.
Biochem Biophys Res Commun. 2010 Mar 12;393(3):345-9.
Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana.
Vidal EA, Araus V, Lu C, Parry G, Green PJ, Coruzzi GM, Gutiérrez RA.
Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4477-82.
Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development.
Yoon EK, Yang JH, Lim J, Kim SH, Kim SK, Lee WS.
Nucleic Acids Res. 2010 Mar 1;38(4):1382-91.
Systemic signaling and local sensing of phosphate in common bean: cross-talk between photosynthate and microRNA399.
Liu JQ, Allan DL, Vance CP.
Mol Plant. 2010 Mar;3(2):428-37.
Co-ordination of developmental processes by small RNAs during leaf development.
Pulido A, Laufs P.
J Exp Bot. 2010 Mar;61(5):1277-91.
Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature
microRNAs in Vitis vinifera.
Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME,
Horner DS.
BMC Genomics. 2010 Feb 12;11:109.
The evolutionary-developmental analysis of plant microRNAs.
Jasinski S, Vialette-Guiraud AC, Scutt CP.
Philos Trans R Soc Lond B Biol Sci. 2010 Feb 12;365(1539):469-76.
Identification of iron-deficiency responsive microRNA genes and cis-elements in Arabidopsis.
Kong WW, Yang ZM.
Plant Physiol Biochem. 2010 Feb-Mar;48(2-3):153-9.
Small RNAs in flower development.
Wollmann H, Weigel D.
Eur J Cell Biol. 2010 Feb-Mar;89(2-3):250-7.
miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula.
Trindade I, Capitão C, Dalmay T, Fevereiro MP, Santos DM.
Planta. 2010 Feb;231(3):705-16.
BiFC imaging assay for plant protein-protein interactions.
Fang Y, Spector DL.
Cold Spring Harb Protoc. 2010 Feb;2010(2):pdb.prot5380.
A simple artificial microRNA vector based on ath-miR169d precursor from Arabidopsis.
Liu C, Zhang L, Sun J, Luo Y, Wang MB, Fan YL, Wang L.
Mol Biol Rep. 2010 Feb;37(2):903-9.
[The role of miR398 in plant stress responses]
Ding YF, Wang GY, Fu YP, Zhu C.
Yi Chuan. 2010 Feb;32(2):129-34.
Cell-to-cell communication in vascular morphogenesis.
Lehesranta SJ, Lichtenberger R, Helariutta Y.
Curr Opin Plant Biol. 2010 Feb;13(1):59-65.
Expression analysis suggests potential roles of microRNAs for phosphate and arbuscular mycorrhizal signaling in Solanum lycopersicum.
Gu M, Xu K, Chen A, Zhu Y, Tang G, Xu G.
Physiol Plant. 2010 Feb;138(2):226-37.
Transgenic expression of tomato bushy stunt virus silencing suppressor P19 via the pOp/LhG4 transactivation system induces viral-like
symptoms in tomato.
Stav R, Hendelman A, Buxdorf K, Arazi T.
Virus Genes. 2010 Feb;40(1):119-29.
One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary
metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L.
Legrand S, Valot N, Nicolé F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L.
Gene. 2010 Jan 15;450(1-2):55-62.
Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor.
Mateos JL, Bologna NG, Chorostecki U, Palatnik JF.
Curr Biol. 2010 Jan 12;20(1):49-54.
RNA secondary structural determinants of miRNA precursor processing in Arabidopsis.
Song L, Axtell MJ, Fedoroff NV.
Curr Biol. 2010 Jan 12;20(1):37-41.
Structure determinants for accurate processing of miR172a in Arabidopsis thaliana.
Werner S, Wollmann H, Schneeberger K, Weigel D.
Curr Biol. 2010 Jan 12;20(1):42-8.
Transcriptional control of gene expression by microRNAs.
Khraiwesh B, Arif MA, Seumel GI, Ossowski S, Weigel D, Reski R, Frank W.
Cell. 2010 Jan 8;140(1):111-22.
Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.).
Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ.
BMC Plant Biol. 2010 Jan 5;10:3.
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing.
Cuperus JT, Montgomery TA, Fahlgren N, Burke RT, Townsend T, Sullivan CM, Carrington JC.
Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):466-71.
Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage.
Nair SK, Wang N, Turuspekov Y, Pourkheirandish M, Sinsuwongwat S, Chen G, Sameri M, Tagiri A, Honda I, Watanabe Y, Kanamori H,
Wicker T, Stein N, Nagamura Y, Matsumoto T, Komatsuda T.
Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):490-5.
Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants.
Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M.
Nucleic Acids Res. 2010 Jan 1;38(3):981-95.
Differential transcriptional expression following thidiazuron-induced callus differentiation developmental shifts in rice.
Chakrabarty D, Trivedi PK, Shri M, Misra P, Asif MH, Dubey S, Kumar S, Rai A, Tiwari M, Shukla D, Pandey A, Nigam D, Tripathi RD, Tuli
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Plant Biol (Stuttg). 2010 Jan;12(1):46-59.
The many roles of small RNAs in leaf development.
Kidner CA.
J Genet Genomics. 2010 Jan;37(1):13-21.
Identification of novel stress-regulated microRNAs from Oryza sativa L.
Jian X, Zhang L, Li G, Zhang L, Wang X, Cao X, Fang X, Chen F.
Genomics. 2010 Jan;95(1):47-55.
The {gamma}-tubulin complex protein GCP4 is required for organizing functional microtubule arrays in Arabidopsis thaliana.
Kong Z, Hotta T, Lee YR, Horio T, Liu B.
Plant Cell. 2010 Jan;22(1):191-204.
PMRD: plant microRNA database.
Zhang Z, Yu J, Li D, Zhang Z, Liu F, Zhou X, Wang T, Ling Y, Su Z.
Nucleic Acids Res. 2010 Jan;38(Database issue):D806-13.
Control of cell proliferation in Arabidopsis thaliana by microRNA miR396.
Rodriguez RE, Mecchia MA, Debernardi JM, Schommer C, Weigel D, Palatnik JF.
Development. 2010 Jan;137(1):103-12.
Turnover of mature miRNAs and siRNAs in plants and algae.
Cerutti H, Ibrahim F.
Adv Exp Med Biol. 2010;700:124-39.
Signaling sides adaxial-abaxial patterning in leaves.
Kidner CA, Timmermans MC.
Curr Top Dev Biol. 2010;91:141-68.
Sculpting the flower; the role of microRNAs in flower development.
Nag A, Jack T.
Curr Top Dev Biol. 2010;91:349-78.
Cloning of stress-responsive microRNAs and other small RNAs from plants.
Reyes JL, Arenas-Huertero C, Sunkar R.
Methods Mol Biol. 2010;639:239-51.
An array platform for identification of stress-responsive microRNAs in plants.
Jia X, Mendu V, Tang G.
Methods Mol Biol. 2010;639:253-69.
Translational inhibition by microRNAs in plants.
Yu B, Wang H.
Prog Mol Subcell Biol. 2010;50:41-57.
Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis.
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW.
J Exp Bot. 2010;61(1):165-77.
Piecing the puzzle together: genetic requirements for miRNA biogenesis in Arabidopsis thaliana.
Xie Z.
Methods Mol Biol. 2010;592:1-17.
Prediction of plant miRNA genes.
Jones-Rhoades MW.
Methods Mol Biol. 2010;592:19-30.
miRNA Target Prediction in Plants.
Fahlgren N, Carrington JC.
Methods Mol Biol. 2010;592:51-7.
Bioinformatics analysis of small RNAs in plants using next generation sequencing technologies.
Nobuta K, McCormick K, Nakano M, Meyers BC.
Methods Mol Biol. 2010;592:89-106.
Biotic stress-associated microRNAs: identification, detection, regulation, and functional analysis.
Jay F, Renou JP, Voinnet O, Navarro L.
Methods Mol Biol. 2010;592:183-202.
Abiotic stress-associated miRNAs: detection and functional analysis.
Jeong DH, German MA, Rymarquis LA, Thatcher SR, Green PJ.
Methods Mol Biol. 2010;592:203-30.