Plant
Profiling of cold-stress-responsive miRNAs in rice by microarrays.
Lv DK, Bai X, Li Y, Ding XD, Ge Y, Cai H, Ji W, Wu N, Zhu YM.
Gene. 2010 Jul 1;459(1-2):39-47.
Suppression of microRNA accumulation via RNA interference in Arabidopsis thaliana.
Vaistij FE, Elias L, George GL, Jones L.
Plant Mol Biol. 2010 Jul;73(4-5):391-7.
Small RNAs in angiosperm gametophytes: from epigenetics to gamete development.
Le Trionnaire G, Twell D.
Genes Dev. 2010 Jun 1;24(11):1081-5.
Overexpression of Osta-siR2141 caused abnormal polarity establishment and retarded growth in rice.
Wang J, Gao X, Li L, Shi X, Zhang J, Shi Z.
J Exp Bot. 2010 Jun;61(6):1885-95.
Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice.
Jiao Y, Wang Y, Xue D, Wang J, Yan M, Liu G, Dong G, Zeng D, Lu Z, Zhu X, Qian Q, Li J.
Nat Genet. 2010 Jun;42(6):541-4.
Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate.
Carlsbecker A, Lee JY, Roberts CJ, Dettmer J, Lehesranta S, Zhou J, Lindgren O, Moreno-Risueno MA, Vatén A, Thitamadee S,
Campilho A, Sebastian J, Bowman JL, Helariutta Y, Benfey PN.
Nature. 2010 May 20;465(7296):316-21.
Developmental biology: Roots respond to an inner calling.
Scheres B.
Nature. 2010 May 20;465(7296):299-300.
Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells.
Molnar A, Melnyk CW, Bassett A, Hardcastle TJ, Dunn R, Baulcombe DC.
Science. 2010 May 14;328(5980):872-5.
Molecular biology. Small RNA makes its move.
Martienssen R.
Science. 2010 May 14;328(5980):834-5.
A new mechanism in plant engineering: the potential roles of microRNAs in molecular breeding for crop improvement.
Liu Q, Chen YQ.
Biotechnol Adv. 2010 May-Jun;28(3):301-7.
Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis.
Lee H, Yoo SJ, Lee JH, Kim W, Yoo SK, Fitzgerald H, Carrington JC, Ahn JH.
Nucleic Acids Res. 2010 May;38(9):3081-93.
Sequence variation and selection of small RNAs in domesticated rice.
Wang Y, Shen D, Bo S, Chen H, Zheng J, Zhu QH, Cai D, Helliwell C, Fan L.
BMC Evol Biol. 2010 Apr 30;10:119.
Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type.
Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X.
BMC Genomics. 2010 Apr 17;11:246.
Phloem small RNAs, nutrient stress responses, and systemic mobility.
Buhtz A, Pieritz J, Springer F, Kehr J.
BMC Plant Biol. 2010 Apr 13;10:64.
RNAi-mediated down-regulation of DCL1 and AGO1 induces developmental changes in resynthesized Arabidopsis allotetraploids.
Lackey E, Ng DW, Chen ZJ.
New Phytol. 2010 Apr;186(1):207-15.
Over-expression of osa-MIR396c decreases salt and alkali stress tolerance.
Gao P, Bai X, Yang L, Lv D, Li Y, Cai H, Ji W, Guo D, Zhu Y.
Planta. 2010 Apr;231(5):991-1001.
Through a generation darkly: small RNAs in the gametophyte.
Grant-Downton RT.
Biochem Soc Trans. 2010 Apr;38(2):617-21.
Short RNAs in tomato.
Dalmay T.
J Integr Plant Biol. 2010 Apr;52(4):388-92.
Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application.
Unver T, Bakar M, Shearman RC, Budak H.
Mol Genet Genomics. 2010 Apr;283(4):397-413.
MicroRNA-mediated signaling involved in plant root development.
Meng Y, Ma X, Chen D, Wu P, Chen M.
Biochem Biophys Res Commun. 2010 Mar 12;393(3):345-9.
Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana.
Vidal EA, Araus V, Lu C, Parry G, Green PJ, Coruzzi GM, Gutiérrez RA.
Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4477-82.
Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development.
Yoon EK, Yang JH, Lim J, Kim SH, Kim SK, Lee WS.
Nucleic Acids Res. 2010 Mar 1;38(4):1382-91.
Co-ordination of developmental processes by small RNAs during leaf development.
Pulido A, Laufs P.
J Exp Bot. 2010 Mar;61(5):1277-91.
Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature
microRNAs in Vitis vinifera.
Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME,
Horner DS.
BMC Genomics. 2010 Feb 12;11:109.
The evolutionary-developmental analysis of plant microRNAs.
Jasinski S, Vialette-Guiraud AC, Scutt CP.
Philos Trans R Soc Lond B Biol Sci. 2010 Feb 12;365(1539):469-76.
Small RNAs in flower development.
Wollmann H, Weigel D.
Eur J Cell Biol. 2010 Feb-Mar;89(2-3):250-7.
miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula.
Trindade I, Capitão C, Dalmay T, Fevereiro MP, Santos DM.
Planta. 2010 Feb;231(3):705-16.
BiFC imaging assay for plant protein-protein interactions.
Fang Y, Spector DL.
Cold Spring Harb Protoc. 2010 Feb;2010(2):pdb.prot5380.
A simple artificial microRNA vector based on ath-miR169d precursor from Arabidopsis.
Liu C, Zhang L, Sun J, Luo Y, Wang MB, Fan YL, Wang L.
Mol Biol Rep. 2010 Feb;37(2):903-9.
[The role of miR398 in plant stress responses]
Ding YF, Wang GY, Fu YP, Zhu C.
Yi Chuan. 2010 Feb;32(2):129-34.
Cell-to-cell communication in vascular morphogenesis.
Lehesranta SJ, Lichtenberger R, Helariutta Y.
Curr Opin Plant Biol. 2010 Feb;13(1):59-65.
Expression analysis suggests potential roles of microRNAs for phosphate and arbuscular mycorrhizal signaling in Solanum lycopersicum.
Gu M, Xu K, Chen A, Zhu Y, Tang G, Xu G.
Physiol Plant. 2010 Feb;138(2):226-37.
Transgenic expression of tomato bushy stunt virus silencing suppressor P19 via the pOp/LhG4 transactivation system induces viral-like
symptoms in tomato.
Stav R, Hendelman A, Buxdorf K, Arazi T.
Virus Genes. 2010 Feb;40(1):119-29.
One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary
metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L.
Legrand S, Valot N, Nicolé F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L.
Gene. 2010 Jan 15;450(1-2):55-62.
Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor.
Mateos JL, Bologna NG, Chorostecki U, Palatnik JF.
Curr Biol. 2010 Jan 12;20(1):49-54.
RNA secondary structural determinants of miRNA precursor processing in Arabidopsis.
Song L, Axtell MJ, Fedoroff NV.
Curr Biol. 2010 Jan 12;20(1):37-41.
Structure determinants for accurate processing of miR172a in Arabidopsis thaliana.
Werner S, Wollmann H, Schneeberger K, Weigel D.
Curr Biol. 2010 Jan 12;20(1):42-8.
Transcriptional control of gene expression by microRNAs.
Khraiwesh B, Arif MA, Seumel GI, Ossowski S, Weigel D, Reski R, Frank W.
Cell. 2010 Jan 8;140(1):111-22.
Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.).
Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ.
BMC Plant Biol. 2010 Jan 5;10:3.
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing.
Cuperus JT, Montgomery TA, Fahlgren N, Burke RT, Townsend T, Sullivan CM, Carrington JC.
Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):466-71.
Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage.
Nair SK, Wang N, Turuspekov Y, Pourkheirandish M, Sinsuwongwat S, Chen G, Sameri M, Tagiri A, Honda I, Watanabe Y, Kanamori H,
Wicker T, Stein N, Nagamura Y, Matsumoto T, Komatsuda T.
Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):490-5.
Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants.
Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M.
Nucleic Acids Res. 2010 Jan 1;38(3):981-95.
Identification of novel stress-regulated microRNAs from Oryza sativa L.
Jian X, Zhang L, Li G, Zhang L, Wang X, Cao X, Fang X, Chen F.
Genomics. 2010 Jan;95(1):47-55.
The {gamma}-tubulin complex protein GCP4 is required for organizing functional microtubule arrays in Arabidopsis thaliana.
Kong Z, Hotta T, Lee YR, Horio T, Liu B.
Plant Cell. 2010 Jan;22(1):191-204.
PMRD: plant microRNA database.
Zhang Z, Yu J, Li D, Zhang Z, Liu F, Zhou X, Wang T, Ling Y, Su Z.
Nucleic Acids Res. 2010 Jan;38(Database issue):D806-13.
Control of cell proliferation in Arabidopsis thaliana by microRNA miR396.
Rodriguez RE, Mecchia MA, Debernardi JM, Schommer C, Weigel D, Palatnik JF.
Development. 2010 Jan;137(1):103-12.
Cloning of stress-responsive microRNAs and other small RNAs from plants.
Reyes JL, Arenas-Huertero C, Sunkar R.
Methods Mol Biol. 2010;639:239-51.
An array platform for identification of stress-responsive microRNAs in plants.
Jia X, Mendu V, Tang G.
Methods Mol Biol. 2010;639:253-69.
Translational inhibition by microRNAs in plants.
Yu B, Wang H.
Prog Mol Subcell Biol. 2010;50:41-57.
Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis.
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW.
J Exp Bot. 2010;61(1):165-77.
Piecing the puzzle together: genetic requirements for miRNA biogenesis in Arabidopsis thaliana.
Xie Z.
Methods Mol Biol. 2010;592:1-17.
Prediction of plant miRNA genes.
Jones-Rhoades MW.
Methods Mol Biol. 2010;592:19-30.
miRNA Target Prediction in Plants.
Fahlgren N, Carrington JC.
Methods Mol Biol. 2010;592:51-7.
Bioinformatics analysis of small RNAs in plants using next generation sequencing technologies.
Nobuta K, McCormick K, Nakano M, Meyers BC.
Methods Mol Biol. 2010;592:89-106.
Biotic stress-associated microRNAs: identification, detection, regulation, and functional analysis.
Jay F, Renou JP, Voinnet O, Navarro L.
Methods Mol Biol. 2010;592:183-202.
Abiotic stress-associated miRNAs: detection and functional analysis.
Jeong DH, German MA, Rymarquis LA, Thatcher SR, Green PJ.
Methods Mol Biol. 2010;592:203-30.