Plant
MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana.
Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H.
BMC Genomics. 2009 Dec 30;10:643.
Virus infection elevates transcriptional activity of miR164a promoter in plants.
Bazzini AA, Almasia NI, Manacorda CA, Mongelli VC, Conti G, Maroniche GA, Rodriguez MC, Distéfano AJ, Hopp HE, del Vas M,
Asurmendi S.
BMC Plant Biol. 2009 Dec 30;9:152.
miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis.
Nag A, King S, Jack T.
Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22534-9.
Complex regulation of the TIR1/AFB family of auxin receptors.
Parry G, Calderon-Villalobos LI, Prigge M, Peret B, Dharmasiri S, Itoh H, Lechner E, Gray WM, Bennett M, Estelle M.
Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22540-5.
Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa).
Zhu QH, Upadhyaya NM, Gubler F, Helliwell CA.
BMC Plant Biol. 2009 Dec 17;9:149.
UV-B-responsive microRNAs in Populus tremula.
Jia X, Ren L, Chen QJ, Li R, Tang G.
J Plant Physiol. 2009 Dec 15;166(18):2046-57.
A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159.
Bologna NG, Mateos JL, Bresso EG, Palatnik JF.
EMBO J. 2009 Dec 2;28(23):3646-56.
Identification of conserved Aquilegia coerulea microRNAs and their targets.
Puzey JR, Kramer EM.
Gene. 2009 Dec 1;448(1):46-56.
Movement of RNA silencing between plant cells: is the question now behind us?
Dunoyer P, Voinnet O.
Trends Plant Sci. 2009 Dec;14(12):643-4.
Identification of microRNAs in wild soybean (Glycine soja).
Chen R, Hu Z, Zhang H.
J Integr Plant Biol. 2009 Dec;51(12):1071-9.
Flexible tools for gene expression and silencing in tomato.
Fernandez AI, Viron N, Alhagdow M, Karimi M, Jones M, Amsellem Z, Sicard A, Czerednik A, Angenent G, Grierson D, May S, Seymour
G, Eshed Y, Lemaire-Chamley M, Rothan C, Hilson P.
Plant Physiol. 2009 Dec;151(4):1729-40.
Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing.
Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ.
Plant Physiol. 2009 Dec;151(4):2120-32.
Arabidopsis SBP-box genes SPL10, SPL11 and SPL2 control morphological change in association with shoot maturation in the
reproductive phase.
Shikata M, Koyama T, Mitsuda N, Ohme-Takagi M.
Plant Cell Physiol. 2009 Dec;50(12):2133-45.
Intron polymorphism pattern in AOX1b of wild St John's wort (Hypericum perforatum) allows discrimination between individual plants.
Ferreira AO, Cardoso HG, Macedo ES, Breviario D, Arnholdt-Schmitt B.
Physiol Plant. 2009 Dec;137(4):520-31.
Physiologic responses and gene diversity indicate olive alternative oxidase as a potential source for markers involved in efficient
adventitious root induction.
Santos Macedo E, Cardoso HG, Hernández A, Peixe AA, Polidoros A, Ferreira A, Cordeiro A, Arnholdt-Schmitt B.
Physiol Plant. 2009 Dec;137(4):532-52.
Carrot alternative oxidase gene AOX2a demonstrates allelic and genotypic polymorphisms in intron 3.
Guerra Cardoso H, Doroteia Campos M, Rita Costa A, Catarina Campos M, Nothnagel T, Arnholdt-Schmitt B.
Physiol Plant. 2009 Dec;137(4):592-608.
Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens
degradome.
Addo-Quaye C, Snyder JA, Park YB, Li YF, Sunkar R, Axtell MJ.
RNA. 2009 Dec;15(12):2112-21.
The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes.
Eamens AL, Smith NA, Curtin SJ, Wang MB, Waterhouse PM.
RNA. 2009 Dec;15(12):2219-35.
High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis
vinifera.
Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME,
Horner DS.
BMC Genomics. 2009 Nov 25;10:558.
Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek).
Tangphatsornruang S, Somta P, Uthaipaisanwong P, Chanprasert J, Sangsrakru D, Seehalak W, Sommanas W, Tragoonrung S, Srinives
P.
BMC Plant Biol. 2009 Nov 24;9:137.
The B73 maize genome: complexity, diversity, and dynamics.
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L,
Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M,
Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps
L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M,
Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar
S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin
J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller
S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich
SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC,
Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J,
Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman
R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S,
Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK.
Science. 2009 Nov 20;326(5956):1112-5.
Two types of cis-acting elements control the abaxial epidermis-specific transcription of the MIR165a and MIR166a genes.
Yao X, Wang H, Li H, Yuan Z, Li F, Yang L, Huang H.
FEBS Lett. 2009 Nov 19;583(22):3711-7.
Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction.
Navarro B, Pantaleo V, Gisel A, Moxon S, Dalmay T, Bisztray G, Di Serio F, Burgyán J.
PLoS One. 2009 Nov 5;4(11):e7686.
The putative miR172 target gene InAPETALA2-like is involved in the photoperiodic flower induction of Ipomoea nil.
Glazińska P, Zienkiewicz A, Wojciechowski W, Kopcewicz J.
J Plant Physiol. 2009 Nov 1;166(16):1801-13.
Rice MicroRNA effector complexes and targets.
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y.
Plant Cell. 2009 Nov;21(11):3421-35.
A genome-wide characterization of microRNA genes in maize.
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D.
PLoS Genet. 2009 Nov;5(11):e1000716.
Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses.
Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK.
Mol Genet Genomics. 2009 Nov;282(5):463-74.
MicroRNAs in the rhizobia legume symbiosis.
Simon SA, Meyers BC, Sherrier DJ.
Plant Physiol. 2009 Nov;151(3):1002-8.
[Bioinformatic prediction of microRNAs and their target genes in maize]
CHEN X, LI WC, FU FL.
Yi Chuan. 2009 Nov;31(11):1149-57.
Computational identification of microRNAs and their targets in wheat (Triticum aestivum L.).
Han Y, Luan F, Zhu H, Shao Y, Chen A, Lu C, Luo Y, Zhu B.
Sci China C Life Sci. 2009 Nov;52(11):1091-100.
Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium
distachyon (L.) Beauv.
Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L.
Funct Integr Genomics. 2009 Nov;9(4):499-511.
Reconstruction of Arabidopsis thaliana fully integrated small RNA pathway.
Jamalkandi SA, Masoudi-Nejad A.
Funct Integr Genomics. 2009 Nov;9(4):419-32.
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids.
Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, Chapman EJ, Carrington JC, Chen X, Wang XJ, Chen ZJ.
Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17835-40.
Identification of microRNAs and their targets from Populus euphratica.
Li B, Yin W, Xia X.
Biochem Biophys Res Commun. 2009 Oct 16;388(2):272-7.
Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts
and microRNA abundance.
Gutierrez L, Bussell JD, Pacurar DI, Schwambach J, Pacurar M, Bellini C.
Plant Cell. 2009 Oct;21(10):3119-32.
Genome-wide survey of rice microRNAs and microRNA-target pairs in the root of a novel auxin-resistant mutant.
Meng Y, Huang F, Shi Q, Cao J, Chen D, Zhang J, Ni J, Wu P, Chen M.
Planta. 2009 Oct;230(5):883-98.
Conserved miRNA analysis in Gossypium hirsutum through small RNA sequencing.
Ruan MB, Zhao YT, Meng ZH, Wang XJ, Yang WC.
Genomics. 2009 Oct;94(4):263-8.
Regulation and functional specialization of small RNA-target nodes during plant development.
Rubio-Somoza I, Cuperus JT, Weigel D, Carrington JC.
Curr Opin Plant Biol. 2009 Oct;12(5):622-7.
Differential effects of mild and severe Cucumber mosaic virus strains in the perturbation of MicroRNA-regulated gene expression in tomato
map to the 3' sequence of RNA 2.
Cillo F, Mascia T, Pasciuto MM, Gallitelli D.
Mol Plant Microbe Interact. 2009 Oct;22(10):1239-49.
Tomato bushy stunt virus recombination guided by introduced microRNA target sequences.
Kumar P, Uratsu S, Dandekar A, Falk BW.
J Virol. 2009 Oct;83(20):10472-9.
Enrichment of a set of microRNAs during the cotton fiber development.
Kwak PB, Wang QQ, Chen XS, Qiu CX, Yang ZM.
BMC Genomics. 2009 Sep 29;10:457.
Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response.
Zhang J, Xu Y, Huan Q, Chong K.
BMC Genomics. 2009 Sep 23;10:449.
Repression of apical homeobox genes is required for embryonic root development in Arabidopsis.
Grigg SP, Galinha C, Kornet N, Canales C, Scheres B, Tsiantis M.
Curr Biol. 2009 Sep 15;19(17):1485-90.
Signals and prepatterns: new insights into organ polarity in plants.
Husbands AY, Chitwood DH, Plavskin Y, Timmermans MC.
Genes Dev. 2009 Sep 1;23(17):1986-97.
Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing.
Mallory AC, Hinze A, Tucker MR, Bouché N, Gasciolli V, Elmayan T, Lauressergues D, Jauvion V, Vaucheret H, Laux T.
PLoS Genet. 2009 Sep;5(9):e1000646.
Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and
nodules.
Lelandais-Brière C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M.
Plant Cell. 2009 Sep;21(9):2780-96.
Conserved microRNAs and their targets in model grass species Brachypodium distachyon.
Unver T, Budak H.
Planta. 2009 Sep;230(4):659-69.
Identification and characterization of 27 conserved microRNAs in citrus.
Song C, Fang J, Li X, Liu H, Thomas Chao C.
Planta. 2009 Sep;230(4):671-85.
Graft-transmissible induction of potato tuberization by the microRNA miR172.
Martin A, Adam H, Díaz-Mendoza M, Zurczak M, González-Schain ND, Suárez-López P.
Development. 2009 Sep;136(17):2873-81.
Cloning and characterization of small non-coding RNAs from grape.
Carra A, Mica E, Gambino G, Pindo M, Moser C, Pè ME, Schubert A.
Plant J. 2009 Sep;59(5):750-63.
Genome-wide identification of small RNA targets based on target enrichment and microarray hybridizations.
Franco-Zorrilla JM, Del Toro FJ, Godoy M, Pérez-Pérez J, López-Vidriero I, Oliveros JC, García-Casado G, Llave C, Solano R.
Plant J. 2009 Sep;59(5):840-50.
Transcriptome analyses revealed diverse expression changes in ago1 and hyl1 Arabidopsis mutants.
Kurihara Y, Kaminuma E, Matsui A, Kawashima M, Tanaka M, Morosawa T, Ishida J, Mochizuki Y, Shinozaki K, Toyoda T, Seki M.
Plant Cell Physiol. 2009 Sep;50(9):1715-20.
Differential and dynamic regulation of miR398 in response to ABA and salt stress in Populus tremula and Arabidopsis thaliana.
Jia X, Wang WX, Ren L, Chen QJ, Mendu V, Willcut B, Dinkins R, Tang X, Tang G.
Plant Mol Biol. 2009 Sep;71(1-2):51-9.
Plant phase transitions make a SPLash.
Fornara F, Coupland G.
Cell. 2009 Aug 21;138(4):625-7.
miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana.
Wang JW, Czech B, Weigel D.
Cell. 2009 Aug 21;138(4):738-49.
The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis.
Wu G, Park MY, Conway SR, Wang JW, Weigel D, Poethig RS.
Cell. 2009 Aug 21;138(4):750-9.
The role of microRNAs in copper and cadmium homeostasis.
Ding YF, Zhu C.
Biochem Biophys Res Commun. 2009 Aug 14;386(1):6-10.
MicroPC (microPC): A comprehensive resource for predicting and comparing plant microRNAs.
Mhuantong W, Wichadakul D.
BMC Genomics. 2009 Aug 7;10:366.
Host small RNAs are big contributors to plant innate immunity.
Padmanabhan C, Zhang X, Jin H.
Curr Opin Plant Biol. 2009 Aug;12(4):465-72.
The microRNA-regulated SBP-Box transcription factor SPL3 is a direct upstream activator of LEAFY, FRUITFULL, and APETALA1.
Yamaguchi A, Wu MF, Yang L, Wu G, Poethig RS, Wagner D.
Dev Cell. 2009 Aug;17(2):268-78.
Small RNAs and developmental timing in plants.
Poethig RS.
Curr Opin Genet Dev. 2009 Aug;19(4):374-8.
Clusters and superclusters of phased small RNAs in the developing inflorescence of rice.
Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH.
Genome Res. 2009 Aug;19(8):1429-40.
Profiling microRNA expression in Arabidopsis pollen using microRNA array and real-time PCR.
Chambers C, Shuai B.
BMC Plant Biol. 2009 Jul 10;9:87.
Regulation of OsSPX1 and OsSPX3 on expression of OsSPX domain genes and Pi-starvation signaling in rice.
Wang Z, Hu H, Huang H, Duan K, Wu Z, Wu P.
J Integr Plant Biol. 2009 Jul;51(7):663-74.
Repression of flowering by the miR172 target SMZ.
Mathieu J, Yant LJ, Mürdter F, Küttner F, Schmid M.
PLoS Biol. 2009 Jul;7(7):e1000148.
Histone acetyltransferase GCN5 interferes with the miRNA pathway in Arabidopsis.
Kim W, Benhamed M, Servet C, Latrasse D, Zhang W, Delarue M, Zhou DX.
Cell Res. 2009 Jul;19(7):899-909.
Expression of microRNAs in cotton.
Zhang B, Pan X.
Mol Biotechnol. 2009 Jul;42(3):269-74.
A versatile zero background T-vector system for gene cloning and functional genomics.
Chen S, Songkumarn P, Liu J, Wang GL.
Plant Physiol. 2009 Jul;150(3):1111-21.
Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction
profiling and small RNA sequencing.
Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR.
Plant Physiol. 2009 Jul;150(3):1541-55.
Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana.
Alves L Jr, Niemeier S, Hauenschild A, Rehmsmeier M, Merkle T.
Nucleic Acids Res. 2009 Jul;37(12):4010-21.
Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress.
Arenas-Huertero C, Pérez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL.
Plant Mol Biol. 2009 Jul;70(4):385-401.
Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape
microRNAs.
Lazzari B, Caprera A, Cestaro A, Merelli I, Del Corvo M, Fontana P, Milanesi L, Velasco R, Stella A.
BMC Plant Biol. 2009 Jun 29;9:82.
Auxin-dependent patterning and gamete specification in the Arabidopsis female gametophyte.
Pagnussat GC, Alandete-Saez M, Bowman JL, Sundaresan V.
Science. 2009 Jun 26;324(5935):1684-9.
Endogenous TasiRNAs mediate non-cell autonomous effects on gene regulation in Arabidopsis thaliana.
Schwab R, Maizel A, Ruiz-Ferrer V, Garcia D, Bayer M, Crespi M, Voinnet O, Martienssen RA.
PLoS One. 2009 Jun 19;4(6):e5980.
Insights into the mechanism of plant development: interactions of miRNAs pathway with phytohormone response.
Liu Q, Chen YQ.
Biochem Biophys Res Commun. 2009 Jun 19;384(1):1-5.
Biochemical evidence for translational repression by Arabidopsis microRNAs.
Lanet E, Delannoy E, Sormani R, Floris M, Brodersen P, Crété P, Voinnet O, Robaglia C.
Plant Cell. 2009 Jun;21(6):1762-8.
Investigating translational repression by microRNAs in Arabidopsis.
Eckardt NA.
Plant Cell. 2009 Jun;21(6):1624.
The long-distance signaling of mineral macronutrients.
Liu TY, Chang CY, Chiou TJ.
Curr Opin Plant Biol. 2009 Jun;12(3):312-9.
Small RNA analysis in Petunia hybrida identifies unusual tissue-specific expression patterns of conserved miRNAs and of a 24mer RNA.
Tedder P, Zubko E, Westhead DR, Meyer P.
RNA. 2009 Jun;15(6):1012-20.
Ectopic expression of miR396 suppresses GRF target gene expression and alters leaf growth in Arabidopsis.
Liu D, Song Y, Chen Z, Yu D.
Physiol Plant. 2009 Jun;136(2):223-36.
MicroRNA expression profiles in conventional and micropropagated strawberry (Fragaria x ananassa Duch.) plants.
Li H, Zhang Z, Huang F, Chang L, Ma Y.
Plant Cell Rep. 2009 Jun;28(6):891-902.
The quantification of tomato microRNAs response to viral infection by stem-loop real-time RT-PCR.
Feng J, Wang K, Liu X, Chen S, Chen J.
Gene. 2009 May 15;437(1-2):14-21.
High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew
(Taxus chinensis).
Qiu D, Pan X, Wilson IW, Li F, Liu M, Teng W, Zhang B.
Gene. 2009 May 1;436(1-2):37-44.
Small RNA pathways are present and functional in the angiosperm male gametophyte.
Grant-Downton R, Hafidh S, Twell D, Dickinson HG.
Mol Plant. 2009 May;2(3):500-12.
LongSAGE analysis of the early response to cold stress in Arabidopsis leaf.
Byun YJ, Kim HJ, Lee DH.
Planta. 2009 May;229(6):1181-200.
[The battle of Silence : action and inhibition of RNA silencing during plant/virus interactions]
Dunoyer P.
Med Sci (Paris). 2009 May;25(5):505-11.
Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs.
Szarzynska B, Sobkowiak L, Pant BD, Balazadeh S, Scheible WR, Mueller-Roeber B, Jarmolowski A, Szweykowska-Kulinska Z.
Nucleic Acids Res. 2009 May;37(9):3083-93.
A microRNA-transcription factor module regulates lateral organ size and patterning in Arabidopsis.
Larue CT, Wen J, Walker JC.
Plant J. 2009 May;58(3):450-63.
A combinatorial approach to determine the context-dependent role in transcriptional and posttranscriptional regulation in Arabidopsis
thaliana.
Lu L, Li J.
BMC Syst Biol. 2009 Apr 28;3:43.
Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana.
Iida K, Jin H, Zhu JK.
BMC Genomics. 2009 Apr 9;10:155.
Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor.
Zhao B, Ge L, Liang R, Li W, Ruan K, Lin H, Jin Y.
BMC Mol Biol. 2009 Apr 8;10:29.
The OrcPI locus: genomic organization, expression pattern, and noncoding regions variability in Orchis italica (Orchidaceae) and related
species.
Cantone C, Sica M, Gaudio L, Aceto S.
Gene. 2009 Apr 1;434(1-2):9-15.
Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes
in maize.
Wang X, Elling AA, Li X, Li N, Peng Z, He G, Sun H, Qi Y, Liu XS, Deng XW.
Plant Cell. 2009 Apr;21(4):1053-69.
Evidence for antisense transcription associated with microRNA target mRNAs in Arabidopsis.
Luo QJ, Samanta MP, Köksal F, Janda J, Galbraith DW, Richardson CR, Ou-Yang F, Rock CD.
PLoS Genet. 2009 Apr;5(4):e1000457.
Adenylation of plant miRNAs.
Lu S, Sun YH, Chiang VL.
Nucleic Acids Res. 2009 Apr;37(6):1878-85.
Cyclophilin 40 is required for microRNA activity in Arabidopsis.
Smith MR, Willmann MR, Wu G, Berardini TZ, Möller B, Weijers D, Poethig RS.
Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5424-9.
Evolution of MIR168 paralogs in Brassicaceae.
Gazzani S, Li M, Maistri S, Scarponi E, Graziola M, Barbaro E, Wunder J, Furini A, Saedler H, Varotto C.
BMC Evol Biol. 2009 Mar 23;9:62.
Diurnal oscillation in the accumulation of Arabidopsis microRNAs, miR167, miR168, miR171 and miR398.
Siré C, Moreno AB, Garcia-Chapa M, López-Moya JJ, San Segundo B.
FEBS Lett. 2009 Mar 18;583(6):1039-44.
Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis.
Jagadeeswaran G, Saini A, Sunkar R.
Planta. 2009 Mar;229(4):1009-14.
Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173.
Felippes FF, Weigel D.
EMBO Rep. 2009 Mar;10(3):264-70.
Highly efficient gene silencing using perfect complementary artificial miRNA targeting AP1 or heteromeric artificial miRNA targeting AP1
and CAL genes.
Park W, Zhai J, Lee JY.
Plant Cell Rep. 2009 Mar;28(3):469-80.
The more and smaller cells mutants of Arabidopsis thaliana identify novel roles for SQUAMOSA PROMOTER BINDING PROTEIN-LIKE
genes in the control of heteroblasty.
Usami T, Horiguchi G, Yano S, Tsukaya H.
Development. 2009 Mar;136(6):955-64.
The NAC-domain transcription factor GOBLET specifies leaflet boundaries in compound tomato leaves.
Berger Y, Harpaz-Saad S, Brand A, Melnik H, Sirding N, Alvarez JP, Zinder M, Samach A, Eshed Y, Ori N.
Development. 2009 Mar;136(5):823-32.
[Advances in study of plant miRNAs under stressed environmental conditions]
Shen YO, Lin HJ, Zhang ZM, Gao SB, Pan GT.
Yi Chuan. 2009 Mar;31(3):227-35.
Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis.
Kim JH, Woo HR, Kim J, Lim PO, Lee IC, Choi SH, Hwang D, Nam HG.
Science. 2009 Feb 20;323(5917):1053-7.
Origin, biogenesis, and activity of plant microRNAs.
Voinnet O.
Cell. 2009 Feb 20;136(4):669-87.
Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling.
Liu Q, Zhang YC, Wang CY, Luo YC, Huang QJ, Chen SY, Zhou H, Qu LH, Chen YQ.
FEBS Lett. 2009 Feb 18;583(4):723-8.
Genomic analysis of rice microRNA promoters and clusters.
Cui X, Xu SM, Mu DS, Yang ZM.
Gene. 2009 Feb 15;431(1-2):61-6.
Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model.
Joung JG, Fei Z.
Bioinformatics. 2009 Feb 1;25(3):387-93.
Characterization and expression profiles of miRNAs in rice seeds.
Xue LJ, Zhang JJ, Xue HW.
Nucleic Acids Res. 2009 Feb;37(3):916-30.
Heavy metal-regulated new microRNAs from rice.
Huang SQ, Peng J, Qiu CX, Yang ZM.
J Inorg Biochem. 2009 Feb;103(2):282-7.
Computational identification of 48 potato microRNAs and their targets.
Zhang W, Luo Y, Gong X, Zeng W, Li S.
Comput Biol Chem. 2009 Feb;33(1):84-93.
Big impacts by small RNAs in plant development.
Chuck G, Candela H, Hake S.
Curr Opin Plant Biol. 2009 Feb;12(1):81-6.
Stomatal development: new signals and fate determinants.
Nadeau JA.
Curr Opin Plant Biol. 2009 Feb;12(1):29-35.
Growth and development: a broad view of fine detail.
Gasser CS, Dean C.
Curr Opin Plant Biol. 2009 Feb;12(1):1-3.
Endogenous small RNAs in grain: semi-quantification and sequence homology to human and animal genes.
Ivashuta SI, Petrick JS, Heisel SE, Zhang Y, Guo L, Reynolds TL, Rice JF, Allen E, Roberts JK.
Food Chem Toxicol. 2009 Feb;47(2):353-60.
Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules.
Wang Y, Li P, Cao X, Wang X, Zhang A, Li X.
Biochem Biophys Res Commun. 2009 Jan 23;378(4):799-803.
SQUAMOSA Promoter Binding Protein-Like7 Is a Central Regulator for Copper Homeostasis in Arabidopsis.
Yamasaki H, Hayashi M, Fukazawa M, Kobayashi Y, Shikanai T.
Plant Cell. 2009 Jan;21(1):347-61.
Differential expression of miRNAs in response to salt stress in maize roots.
Ding D, Zhang L, Wang H, Liu Z, Zhang Z, Zheng Y.
Ann Bot (Lond). 2009 Jan;103(1):29-38.
Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses.
Ben Amor B, Wirth S, Merchan F, Laporte P, d'Aubenton-Carafa Y, Hirsch J, Maizel A, Mallory A, Lucas A, Deragon JM, Vaucheret H,
Thermes C, Crespi M.
Genome Res. 2009 Jan;19(1):57-69.
Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types.
Kawashima CG, Yoshimoto N, Maruyama-Nakashita A, Tsuchiya YN, Saito K, Takahashi H, Dalmay T.
Plant J. 2009 Jan;57(2):313-21.
Regulation of small RNA accumulation in the maize shoot apex.
Nogueira FT, Chitwood DH, Madi S, Ohtsu K, Schnable PS, Scanlon MJ, Timmermans MC.
PLoS Genet. 2009 Jan;5(1):e1000320.
Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins.
Merchan F, Boualem A, Crespi M, Frugier F.
Genome Biol. 2009;10(12):R136.
Small RNAs and their roles in plant development.
Chen X.
Annu Rev Cell Dev Biol. 2009;25:21-44.
Novel miR390-dependent transacting siRNA precursors in plants revealed by a PCR-based experimental approach and database analysis.
Krasnikova MS, Milyutina IA, Bobrova VK, Ozerova LV, Troitsky AV, Solovyev AG, Morozov SY.
J Biomed Biotechnol. 2009;2009:952304.
Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families.
Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R.
New Phytol. 2009;184(1):85-98.
Roles of plant small RNAs in biotic stress responses.
Ruiz-Ferrer V, Voinnet O.
Annu Rev Plant Biol. 2009;60:485-510.
Discovery of plant microRNAs and short-interfering RNAs by deep parallel sequencing.
Chellappan P, Jin H.
Methods Mol Biol. 2009;495:121-32.