Plant
Conservation and divergence of microRNAs in Populus.
Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE.
BMC Genomics. 2007 Dec 31;8:481.
Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome.
Chekanova JA, Gregory BD, Reverdatto SV, Chen H, Kumar R, Hooker T, Yazaki J, Li P, Skiba N, Peng Q, Alonso J, Brukhin V,
Grossniklaus U, Ecker JR, Belostotsky DA.
Cell. 2007 Dec 28;131(7):1340-53.
A novel class of bacteria-induced small RNAs in Arabidopsis.
Katiyar-Agarwal S, Gao S, Vivian-Smith A, Jin H.
Genes Dev. 2007 Dec 1;21(23):3123-34.
Computational prediction of rice (Oryza sativa) miRNA targets.
Archak S, Nagaraju J.
Genomics Proteomics Bioinformatics. 2007 Dec;5(3-4):196-206.
The maize tasselseed4 microRNA controls sex determination and meristem cell fate by targeting Tasselseed6/indeterminate spikelet1.
Chuck G, Meeley R, Irish E, Sakai H, Hake S.
Nat Genet. 2007 Dec;39(12):1517-21.
Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors.
Gy I, Gasciolli V, Lauressergues D, Morel JB, Gombert J, Proux F, Proux C, Vaucheret H, Mallory AC.
Plant Cell. 2007 Nov;19(11):3451-61.
Cloning of novel repeat-associated small RNAs derived from hairpin precursors in Oryza sativa.
Yao C, Zhao B, Li W, Li Y, Qin W, Huang B, Jin Y.
Acta Biochim Biophys Sin (Shanghai). 2007 Nov;39(11):829-34.
Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants.
Lindow M, Jacobsen A, Nygaard S, Mang Y, Krogh A.
PLoS Comput Biol. 2007 Nov;3(11):e238.
Specific enrichment of miRNAs in Arabidopsis thaliana infected with Tobacco mosaic virus.
Tagami Y, Inaba N, Kutsuna N, Kurihara Y, Watanabe Y.
DNA Res. 2007 Oct 31;14(5):227-33.
Comparative analysis of the SBP-box gene families in P. patens and seed plants.
Riese M, Hohmann S, Saedler H, Munster T, Huijser P.
Gene. 2007 Oct 15;401(1-2):28-37.
Characterization of small RNAs derived from Citrus exocortis viroid (CEVd) in infected tomato plants.
Martín R, Arenas C, Daròs JA, Covarrubias A, Reyes JL, Chua NH.
Virology. 2007 Oct 10;367(1):135-46.
Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family.
Allen RS, Li J, Stahle MI, Dubroué A, Gubler F, Millar AA.
Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16371-6.
Molecular evolution and selection of a gene encoding two tandem microRNAs in rice.
Wang S, Zhu QH, Guo X, Gui Y, Bao J, Helliwell C, Fan L.
FEBS Lett. 2007 Oct 2;581(24):4789-93.
Expression and functional analyses of microRNA417 in Arabidopsis thaliana under stress conditions.
Jung HJ, Kang H.
Plant Physiol Biochem. 2007 Oct-Nov;45(10-11):805-11.
New approaches for the analysis of Arabidopsis thaliana small RNAs.
Boccara M, Sarazin A, Billoud B, Jolly V, Martienssen R, Baulcombe D, Colot V.
Biochimie. 2007 Oct;89(10):1252-6.
Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages.
Liu PP, Montgomery TA, Fahlgren N, Kasschau KD, Nonogaki H, Carrington JC.
Plant J. 2007 Oct;52(1):133-46.
Conservation and evolution of miRNA regulatory programs in plant development.
Willmann MR, Poethig RS.
Curr Opin Plant Biol. 2007 Oct;10(5):503-11.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P,
Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V,
Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche
I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave
F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; French-Italian Public Consortium
for Grapevine Genome Characterization.
Nature. 2007 Sep 27;449(7161):463-7.
Location of a possible miRNA processing site in SmD3/SmB nuclear bodies in Arabidopsis.
Fujioka Y, Utsumi M, Ohba Y, Watanabe Y.
Plant Cell Physiol. 2007 Sep;48(9):1243-53.
The GIGANTEA-regulated microRNA172 mediates photoperiodic flowering independent of CONSTANS in Arabidopsis.
Jung JH, Seo YH, Seo PJ, Reyes JL, Yun J, Chua NH, Park CM.
Plant Cell. 2007 Sep;19(9):2736-48.
miR172 regulates stem cell fate and defines the inner boundary of APETALA3 and PISTILLATA expression domain in Arabidopsis floral
meristems.
Zhao L, Kim Y, Dinh TT, Chen X.
Plant J. 2007 Sep;51(5):840-9.
MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development.
Lu S, Sun YH, Amerson H, Chiang VL.
Plant J. 2007 Sep;51(6):1077-98.
Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants.
Barakat A, Wall K, Leebens-Mack J, Wang YJ, Carlson JE, Depamphilis CW.
Plant J. 2007 Sep;51(6):991-1003.
Cloning and characterization of microRNAs from Brassica napus.
Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL.
FEBS Lett. 2007 Aug 7;581(20):3848-56.
Identification of cotton microRNAs and their targets.
Zhang B, Wang Q, Wang K, Pan X, Liu F, Guo T, Cobb GP, Anderson TA.
Gene. 2007 Aug 1;397(1-2):26-37.
MicroRNA-mediated regulation of stomatal development in Arabidopsis.
Kutter C, Schöb H, Stadler M, Meins F Jr, Si-Ammour A.
Plant Cell. 2007 Aug;19(8):2417-29.
Identification of novel small RNAs in tomato (Solanum lycopersicum).
Pilcher RL, Moxon S, Pakseresht N, Moulton V, Manning K, Seymour G, Dalmay T.
Planta. 2007 Aug;226(3):709-17.
Infection and coaccumulation of tobacco mosaic virus proteins alter microRNA levels, correlating with symptom and plant development.
Bazzini AA, Hopp HE, Beachy RN, Asurmendi S.
Proc Natl Acad Sci U S A. 2007 Jul 17;104(29):12157-62.
Evidence for targeting common siRNA hotspots and GC preference by plant Dicer-like proteins.
Ho T, Wang H, Pallett D, Dalmay T.
FEBS Lett. 2007 Jul 10;581(17):3267-72.
Characterization of silencing suppressor 2b of cucumber mosaic virus based on examination of its small RNA-binding abilities.
Goto K, Kobori T, Kosaka Y, Natsuaki T, Masuta C.
Plant Cell Physiol. 2007 Jul;48(7):1050-60.
The nuclear pore protein AtTPR is required for RNA homeostasis, flowering time, and auxin signaling.
Jacob Y, Mongkolsiriwatana C, Veley KM, Kim SY, Michaels SD.
Plant Physiol. 2007 Jul;144(3):1383-90.
Sequence and expression differences underlie functional specialization of arabidopsis microRNAs miR159 and miR319.
Palatnik JF, Wollmann H, Schommer C, Schwab R, Boisbouvier J, Rodriguez R, Warthmann N, Allen E, Dezulian T, Huson D, Carrington
JC, Weigel D.
Dev Cell. 2007 Jul;13(1):115-25.
A conserved microRNA module exerts homeotic control over Petunia hybrida and Antirrhinum majus floral organ identity.
Cartolano M, Castillo R, Efremova N, Kuckenberg M, Zethof J, Gerats T, Schwarz-Sommer Z, Vandenbussche M.
Nat Genet. 2007 Jul;39(7):901-5.
Small RNAs as big players in plant abiotic stress responses and nutrient deprivation.
Sunkar R, Chinnusamy V, Zhu J, Zhu JK.
Trends Plant Sci. 2007 Jul;12(7):301-9.
Intra- and intercellular RNA interference in Arabidopsis thaliana requires components of the microRNA and heterochromatic silencing
pathways.
Dunoyer P, Himber C, Ruiz-Ferrer V, Alioua A, Voinnet O.
Nat Genet. 2007 Jul;39(7):848-56.
Computational identification of microRNAs and their targets in Gossypium hirsutum expressed sequence tags.
Qiu CX, Xie FL, Zhu YY, Guo K, Huang SQ, Nie L, Yang ZM.
Gene. 2007 Jun 15;395(1-2):49-61.
Regulation of copper homeostasis by micro-RNA in Arabidopsis.
Yamasaki H, Abdel-Ghany SE, Cohu CM, Kobayashi Y, Shikanai T, Pilon M.
J Biol Chem. 2007 Jun 1;282(22):16369-78.
Common functions for diverse small RNAs of land plants.
Axtell MJ, Snyder JA, Bartel DP.
Plant Cell. 2007 Jun;19(6):1750-69.
INCREASED SIZE EXCLUSION LIMIT 2 encodes a putative DEVH box RNA helicase involved in plasmodesmata function during
Arabidopsis embryogenesis.
Kobayashi K, Otegui MS, Krishnakumar S, Mindrinos M, Zambryski P.
Plant Cell. 2007 Jun;19(6):1885-97.
Genomic and genetic control of phosphate stress in legumes.
Tesfaye M, Liu J, Allan DL, Vance CP.
Plant Physiol. 2007 Jun;144(2):594-603.
Artificial microRNA-mediated virus resistance in plants.
Qu J, Ye J, Fang R.
J Virol. 2007 Jun;81(12):6690-9.
Regulation of LANCEOLATE by miR319 is required for compound-leaf development in tomato.
Ori N, Cohen AR, Etzioni A, Brand A, Yanai O, Shleizer S, Menda N, Amsellem Z, Efroni I, Pekker I, Alvarez JP, Blum E, Zamir D, Eshed Y.
Nat Genet. 2007 Jun;39(6):787-91.
Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants.
Fang Y, Spector DL.
Curr Biol. 2007 May 1;17(9):818-23.
The functions of microRNAs in plants.
Wang QL, Li ZH.
Front Biosci. 2007 May 1;12:3975-82.
Components of the Arabidopsis mRNA decapping complex are required for early seedling development.
Goeres DC, Van Norman JM, Zhang W, Fauver NA, Spencer ML, Sieburth LE.
Plant Cell. 2007 May;19(5):1549-64.
An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis.
Smith LM, Pontes O, Searle I, Yelina N, Yousafzai FK, Herr AJ, Pikaard CS, Baulcombe DC.
Plant Cell. 2007 May;19(5):1507-21.
[Phosphate status and regulation system in plants]
Mimura T, Ohnishi M, Fukaki H.
Tanpakushitsu Kakusan Koso. 2007 May;52(6 Suppl):625-32.
Computational identification of novel microRNAs and targets in Brassica napus.
Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM.
FEBS Lett. 2007 Apr 3;581(7):1464-74.
Heterotopic expression of B-class floral homeotic genes PISTILLATA/GLOBOSA supports a modified model for crocus (Crocus sativus L.)
flower formation.
Kalivas A, Pasentsis K, Polidoros AN, Tsaftaris AS.
DNA Seq. 2007 Apr;18(2):120-30.
The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA.
Chuck G, Cigan AM, Saeteurn K, Hake S.
Nat Genet. 2007 Apr;39(4):544-9.
SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting
endogenous siRNA.
Hernandez-Pinzon I, Yelina NE, Schwach F, Studholme DJ, Baulcombe D, Dalmay T.
Plant J. 2007 Apr;50(1):140-8.
Selective targeting of miRNA-regulated plant development by a viral counter-silencing protein.
Lewsey M, Robertson FC, Canto T, Palukaitis P, Carr JP.
Plant J. 2007 Apr;50(2):240-52.
Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body.
Song L, Han MH, Lesicka J, Fedoroff N.
Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5437-42.
Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution.
Fattash I, Voss B, Reski R, Hess WR, Frank W.
BMC Plant Biol. 2007 Mar 14;7:13.
Identification of drought-induced microRNAs in rice.
Zhao B, Liang R, Ge L, Li W, Xiao H, Lin H, Ruan K, Jin Y.
Biochem Biophys Res Commun. 2007 Mar 9;354(2):585-90.
[Advances in the study of plant microRNAs]
Li PW, Lu XY, Li CZ, Fang J, Tian Y.
Yi Chuan. 2007 Mar;29(3):283-8.
Evolution of plant microRNA gene families.
Li A, Mao L.
Cell Res. 2007 Mar;17(3):212-8.
Overexpression of miR165 affects apical meristem formation, organ polarity establishment and vascular development in Arabidopsis.
Zhou GK, Kubo M, Zhong R, Demura T, Ye ZH.
Plant Cell Physiol. 2007 Mar;48(3):391-404.
Plants expressing a miR164-resistant CUC2 gene reveal the importance of post-meristematic maintenance of phyllotaxy in Arabidopsis.
Peaucelle A, Morin H, Traas J, Laufs P.
Development. 2007 Mar;134(6):1045-50.
Establishing leaf polarity: the role of small RNAs and positional signals in the shoot apex.
Chitwood DH, Guo M, Nogueira FT, Timmermans MC.
Development. 2007 Mar;134(5):813-23.
The role of microRNAs in sensing nutrient stress.
Chiou TJ.
Plant Cell Environ. 2007 Mar;30(3):323-32.
Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness.
Sieber P, Wellmer F, Gheyselinck J, Riechmann JL, Meyerowitz EM.
Development. 2007 Mar;134(6):1051-60.
The N-terminal double-stranded RNA binding domains of Arabidopsis HYPONASTIC LEAVES1 are sufficient for pre-microRNA
processing.
Wu F, Yu L, Cao W, Mao Y, Liu Z, He Y.
Plant Cell. 2007 Mar;19(3):914-25.
Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on
miRNA- and tasiRNA-directed targeting.
Howell MD, Fahlgren N, Chapman EJ, Cumbie JS, Sullivan CM, Givan SA, Kasschau KD, Carrington JC.
Plant Cell. 2007 Mar;19(3):926-42.
Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis.
Chen HM, Li YH, Wu SH.
Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3318-23.
The miRNA156/157 recognition element in the 3' UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational
inhibition in seedlings.
Gandikota M, Birkenbihl RP, Hohmann S, Cardon GH, Saedler H, Huijser P.
Plant J. 2007 Feb;49(4):683-93.
ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination.
Reyes JL, Chua NH.
Plant J. 2007 Feb;49(4):592-606.
Histone deacetylases and ASYMMETRIC LEAVES2 are involved in the establishment of polarity in leaves of Arabidopsis.
Ueno Y, Ishikawa T, Watanabe K, Terakura S, Iwakawa H, Okada K, Machida C, Machida Y.
Plant Cell. 2007 Feb;19(2):445-57.
CSRDB: a small RNA integrated database and browser resource for cereals.
Johnson C, Bowman L, Adai AT, Vance V, Sundaresan V.
Nucleic Acids Res. 2007 Jan;35(Database issue):D829-33.
Regulatory small RNAs in plants.
Johnson C, Sundaresan V.
EXS. 2007;97:99-113.
UV-B responsive microRNA genes in Arabidopsis thaliana.
Zhou X, Wang G, Zhang W.
Mol Syst Biol. 2007;3:103.