Plant
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP.
Genes Dev. 2006 Dec 15;20(24):3407-25.
Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense.
Zhang X, Yuan YR, Pei Y, Lin SS, Tuschl T, Patel DJ, Chua NH.
Genes Dev. 2006 Dec 1;20(23):3255-68.
A family of microRNAs present in plants and animals.
Arteaga-Vazquez M, Caballero-Perez J, Vielle-Calzada JP.
Plant Cell. 2006 Dec;18(12):3355-69.
[Small RNA world in plants]
Takeda A, Watanabe Y.
Tanpakushitsu Kakusan Koso. 2006 Dec;51(16 Suppl):2463-70.
MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatula.
Combier JP, Frugier F, de Billy F, Boualem A, El-Yahyaoui F, Moreau S, Vernie T, Ott T, Gamas P, Crespi M, Niebel A.
Genes Dev. 2006 Nov 15;20(22):3084-8.
A two-hit trigger for siRNA biogenesis in plants.
Axtell MJ, Jan C, Rajagopalan R, Bartel DP.
Cell. 2006 Nov 3;127(3):565-77.
Significant sequence similarities in promoters and precursors of Arabidopsis thaliana non-conserved microRNAs.
Wang Y, Hindemitt T, Mayer KF.
Bioinformatics. 2006 Nov 1;22(21):2585-9.
Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction.
Wu MF, Tian Q, Reed JW.
Development. 2006 Nov;133(21):4211-8.
Expression of artificial microRNAs in transgenic Arabidopsis thaliana confers virus resistance.
Niu QW, Lin SS, Reyes JL, Chen KC, Wu HW, Yeh SD, Chua NH.
Nat Biotechnol. 2006 Nov;24(11):1420-8.
The exoribonuclease XRN4 is a component of the ethylene response pathway in Arabidopsis.
Potuschak T, Vansiri A, Binder BM, Lechner E, Vierstra RD, Genschik P.
Plant Cell. 2006 Nov;18(11):3047-57.
The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis.
Nikovics K, Blein T, Peaucelle A, Ishida T, Morin H, Aida M, Laufs P.
Plant Cell. 2006 Nov;18(11):2929-45.
Diversity of endogenous small non-coding RNAs in Oryza sativa.
Chen Z, Zhang J, Kong J, Li S, Fu Y, Li S, Zhang H, Li Y, Zhu Y.
Genetica. 2006 Sep-Nov;128(1-3):21-31.
MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant.
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC.
Genome Res. 2006 Oct;16(10):1276-88.
SERRATE: a new player on the plant microRNA scene.
Lobbes D, Rallapalli G, Schmidt DD, Martin C, Clarke J.
EMBO Rep. 2006 Oct;7(10):1052-8.
[The UN peace-keeping force in the plants: A microRNA, miR164, stabilizes the boundary domain in the meristem]
Peaucelle A, Laufs P.
Med Sci (Paris). 2006 Oct;22(10):796-8.
Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic
development.
Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH.
FEBS Lett. 2006 Sep 18;580(21):5111-6.
Plant science. Auxin begins to give up its secrets.
Vogel G.
Science. 2006 Sep 1;313(5791):1230-1.
Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and
microRNA156 in rice.
Xie K, Wu C, Xiong L.
Plant Physiol. 2006 Sep;142(1):280-93.
MicroRNA promoter element discovery in Arabidopsis.
Megraw M, Baev V, Rusinov V, Jensen ST, Kalantidis K, Hatzigeorgiou AG.
RNA. 2006 Sep;12(9):1612-9.
SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis.
Yang L, Liu Z, Lu F, Dong A, Huang H.
Plant J. 2006 Sep;47(6):841-50.
Arabidopsis endogenous small RNAs: highways and byways.
Vazquez F.
Trends Plant Sci. 2006 Sep;11(9):460-8.
Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3.
Wu G, Poethig RS.
Development. 2006 Sep;133(18):3539-47.
GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers.
Tsuji H, Aya K, Ueguchi-Tanaka M, Shimada Y, Nakazono M, Watanabe R, Nishizawa NK, Gomi K, Shimada A, Kitano H, Ashikari M,
Matsuoka M.
Plant J. 2006 Aug;47(3):427-44.
Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and
important for oxidative stress tolerance.
Sunkar R, Kapoor A, Zhu JK.
Plant Cell. 2006 Aug;18(8):2051-65.
An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs.
Bouche N, Lauressergues D, Gasciolli V, Vaucheret H.
EMBO J. 2006 Jul 26;25(14):3347-56.
A novel function for a ubiquitous plant enzyme pectin methylesterase: the enhancer of RNA silencing.
Dorokhov YL, Frolova OY, Skurat EV, Ivanov PA, Gasanova TV, Sheveleva AA, Ravin NV, Makinen KM, Klimyuk VI, Skryabin KG, Gleba
YY, Atabekov JG.
FEBS Lett. 2006 Jul 10;580(16):3872-8.
Plant science. Viruses face a double defense by plant small RNAs.
Waterhouse PM, Fusaro AF.
Science. 2006 Jul 7;313(5783):54-5.
pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene.
Aung K, Lin SI, Wu CC, Huang YT, Su CL, Chiou TJ.
Plant Physiol. 2006 Jul;141(3):1000-11.
PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants.
Bari R, Datt Pant B, Stitt M, Scheible WR.
Plant Physiol. 2006 Jul;141(3):988-99.
MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA
polymerase in Arabidopsis.
Ronemus M, Vaughn MW, Martienssen RA.
Plant Cell. 2006 Jul;18(7):1559-74.
Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss.
Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T.
Plant J. 2006 Jul;47(1):25-37.
Spatio-temporal accumulation of microRNAs is highly coordinated in developing plant tissues.
Valoczi A, Varallyay E, Kauppinen S, Burgyan J, Havelda Z.
Plant J. 2006 Jul;47(1):140-51.
Floral patterning defects induced by Arabidopsis APETALA2 and microRNA172 expression in Nicotiana benthamiana.
Mlotshwa S, Yang Z, Kim Y, Chen X.
Plant Mol Biol. 2006 Jul;61(4-5):781-93.
Identification of 188 conserved maize microRNAs and their targets.
Zhang B, Pan X, Anderson TA.
FEBS Lett. 2006 Jun 26;580(15):3753-62.
Mutations in the microRNA complementarity site of the INCURVATA4 gene perturb meristem function and adaxialize lateral organs in
arabidopsis.
Ochando I, Jover-Gil S, Ripoll JJ, Candela H, Vera A, Ponce MR, Martinez-Laborda A, Micol JL.
Plant Physiol. 2006 Jun;141(2):607-19.
Functions of microRNAs and related small RNAs in plants.
Mallory AC, Vaucheret H.
Nat Genet. 2006 Jun;38 Suppl:S31-6.
Transgenically expressed viral RNA silencing suppressors interfere with microRNA methylation in Arabidopsis.
Yu B, Chapman EJ, Yang Z, Carrington JC, Chen X.
FEBS Lett. 2006 May 29;580(13):3117-20.
Evolution of class III homeodomain-leucine zipper genes in streptophytes.
Floyd SK, Zalewski CS, Bowman JL.
Genetics. 2006 May;173(1):373-88.
Highly specific gene silencing by artificial microRNAs in Arabidopsis.
Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D.
Plant Cell. 2006 May;18(5):1121-33.
Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species.
Alvarez JP, Pekker I, Goldshmidt A, Blum E, Amsellem Z, Eshed Y.
Plant Cell. 2006 May;18(5):1134-51.
Plant fertility defects induced by the enhanced expression of microRNA167.
Ru P, Xu L, Ma H, Huang H.
Cell Res. 2006 May;16(5):457-65.
Duplication and expression analysis of multicopy miRNA gene family members in Arabidopsis and rice.
Jiang D, Yin C, Yu A, Zhou X, Liang W, Yuan Z, Xu Y, Yu Q, Wen T, Zhang D.
Cell Res. 2006 May;16(5):507-18.
A plant miRNA contributes to antibacterial resistance by repressing auxin signaling.
Navarro L, Dunoyer P, Jay F, Arnold B, Dharmasiri N, Estelle M, Voinnet O, Jones JD.
Science. 2006 Apr 21;312(5772):436-9.
'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'.
Yang JH, Han SJ, Yoon EK, Lee WS.
Nucleic Acids Res. 2006 Apr 5;34(6):1892-9.
Post-transcriptional small RNA pathways in plants: mechanisms and regulations.
Vaucheret H.
Genes Dev. 2006 Apr 1;20(7):759-71.
Sweating the small stuff: microRNA discovery in plants.
Meyers BC, Souret FF, Lu C, Green PJ.
Curr Opin Biotechnol. 2006 Apr;17(2):139-46.
Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts.
Hirsch J, Lefort V, Vankersschaver M, Boualem A, Lucas A, Thermes C, d'Aubenton-Carafa Y, Crespi M.
Plant Physiol. 2006 Apr;140(4):1192-204.
Evolution of Arabidopsis microRNA families through duplication events.
Maher C, Stein L, Ware D.
Genome Res. 2006 Apr;16(4):510-9.
Conservation and divergence of plant microRNA genes.
Zhang B, Pan X, Cannon CH, Cobb GP, Anderson TA.
Plant J. 2006 Apr;46(2):243-59.
Cell differentiation and organ initiation at the shoot apical meristem.
Carraro N, Peaucelle A, Laufs P, Traas J.
Plant Mol Biol. 2006 Apr;60(6):811-26.
Signalling between the shoot apical meristem and developing lateral organs.
Golz JF.
Plant Mol Biol. 2006 Apr;60(6):889-903.
Genetic control of shoot organ boundaries.
Aida M, Tasaka M.
Curr Opin Plant Biol. 2006 Feb;9(1):72-7.
Regulation of phosphate homeostasis by MicroRNA in Arabidopsis.
Chiou TJ, Aung K, Lin SI, Wu CC, Chiang SF, Su CL.
Plant Cell. 2006 Feb;18(2):412-21.
The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis.
Kurihara Y, Takashi Y, Watanabe Y.
RNA. 2006 Feb;12(2):206-12.
Induction, suppression and requirement of RNA silencing pathways in virulent Agrobacterium tumefaciens infections.
Dunoyer P, Himber C, Voinnet O.
Nat Genet. 2006 Feb;38(2):258-63.
Molecular phylogenetics and comparative modeling of HEN1, a methyltransferase involved in plant microRNA biogenesis.
Tkaczuk KL, Obarska A, Bujnicki JM.
BMC Evol Biol. 2006 Jan 24;6:6.
Plant microRNA: a small regulatory molecule with big impact.
Zhang B, Pan X, Cobb GP, Anderson TA.
Dev Biol. 2006 Jan 1;289(1):3-16.
Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA.
Nakano M, Nobuta K, Vemaraju K, Tej SS, Skogen JW, Meyers BC.
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D731-5.
Developmental and seasonal expression of PtaHB1, a Populus gene encoding a class III HD-Zip protein, is closely associated with
secondary growth and inversely correlated with the level of microRNA (miR166).
Ko JH, Prassinos C, Han KH.
New Phytol. 2006;169(3):469-78.
MicroRNAS and their regulatory roles in plants.
Jones-Rhoades MW, Bartel DP, Bartel B.
Annu Rev Plant Biol. 2006;57:19-53.
Characterization of five microRNA families in maize.
Mica E, Gianfranceschi L, Pe ME.
J Exp Bot. 2006;57(11):2601-12.
The small RNA world of plants.
Bonnet E, Van de Peer Y, Rouze P.
New Phytol. 2006;171(3):451-68.
In situ hybridization as a tool to study the role of microRNAs in plant development.
Kidner C, Timmermans M.
Methods Mol Biol. 2006;342:159-79.
Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing.
Blevins T, Rajeswaran R, Shivaprasad PV, Beknazariants D, Si-Ammour A, Park HS, Vazquez F, Robertson D, Meins F Jr, Hohn T,
Pooggin MM.
Nucleic Acids Res. 2006;34(21):6233-46.
Organ polarity in plants is specified through the opposing activity of two distinct small regulatory RNAs.
Nogueira FT, Sarkar AK, Chitwood DH, Timmermans MC.
Cold Spring Harb Symp Quant Biol. 2006;71:157-64.
The function of RNAi in plant development.
Poethig RS, Peragine A, Yoshikawa M, Hunter C, Willmann M, Wu G.
Cold Spring Harb Symp Quant Biol. 2006;71:165-70.