Plant
Shaping small RNAs in plants by gene duplication.
Voinnet O.
Nat Genet. 2004 Dec;36(12):1245-6.
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana.
Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC.
Nat Genet. 2004 Dec;36(12):1282-90.
MicroRNAs guide asymmetric DNA modifications guiding asymmetric organs.
Eshed Y, Bowman JL.
Dev Cell. 2004 Nov;7(5):629-30.
MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome.
Bao N, Lye KW, Barton MK.
Dev Cell. 2004 Nov;7(5):653-62.
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs.
Vazquez F, Vaucheret H, Rajagopalan R, Lepers C, Gasciolli V, Mallory AC, Hilbert JL, Bartel DP, Crete P.
Mol Cell. 2004 Oct 8;16(1):69-79.
MicroRNA regulation of gene expression in plants.
Dugas DV, Bartel B.
Curr Opin Plant Biol. 2004 Oct;7(5):512-20.
RNA silencing in plants.
Baulcombe D.
Nature. 2004 Sep 16;431(7006):356-63.
In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant
miRNA.
Parizotto EA, Dunoyer P, Rahm N, Himber C, Voinnet O.
Genes Dev. 2004 Sep 15;18(18):2237-42.
MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems.
Laufs P, Peaucelle A, Morin H, Traas J.
Development. 2004 Sep;131(17):4311-22.
Using RNAi to improve plant nutritional value: from mechanism to application.
Tang G, Galili G.
Trends Biotechnol. 2004 Sep;22(9):463-9.
Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions.
Kurihara Y, Watanabe Y.
Proc Natl Acad Sci U S A. 2004 Aug 24;101(34):12753-8.
MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region.
Mallory AC, Reinhart BJ, Jones-Rhoades MW, Tang G, Zamore PD, Barton MK, Bartel DP.
EMBO J. 2004 Aug 18;23(16):3356-64.
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes.
Bonnet E, Wuyts J, Rouze P, Van de Peer Y.
Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11511-6.
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis.
Sunkar R, Zhu JK.
Plant Cell. 2004 Aug;16(8):2001-19.
A systemic small RNA signaling system in plants.
Yoo BC, Kragler F, Varkonyi-Gasic E, Haywood V, Archer-Evans S, Lee YM, Lough TJ, Lucas WJ.
Plant Cell. 2004 Aug;16(8):1979-2000.
AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets.
Souret FF, Kastenmayer JP, Green PJ.
Mol Cell. 2004 Jul 23;15(2):173-83.
MicroRNA-directed cleavage of Nicotiana sylvestris PHAVOLUTA mRNA regulates the vascular cambium and structure of apical
meristems.
McHale NA, Koning RE.
Plant Cell. 2004 Jul;16(7):1730-40.
Modulation of floral development by a gibberellin-regulated microRNA.
Achard P, Herr A, Baulcombe DC, Harberd NP.
Development. 2004 Jul;131(14):3357-65.
MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral
organs.
Mallory AC, Dugas DV, Bartel DP, Bartel B.
Curr Biol. 2004 Jun 22;14(12):1035-46.
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.
Jones-Rhoades MW, Bartel DP.
Mol Cell. 2004 Jun 18;14(6):787-99.
RNA interference as a new biotechnological tool for the control of virus diseases in plants.
Tenllado F, Llave C, Diaz-Ruiz JR.
Virus Res. 2004 Jun 1;102(1):85-96.
Promoter bashing, microRNAs, and Knox genes. New insights, regulators, and targets-of-regulation in the establishment of lateral organ
polarity in Arabidopsis.
Engstrom EM, Izhaki A, Bowman JL.
Plant Physiol. 2004 Jun;135(2):685-94.
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development.
Vaucheret H, Vazquez F, Crete P, Bartel DP.
Genes Dev. 2004 May 15;18(10):1187-97.
Genetic and functional diversification of small RNA pathways in plants.
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC.
PLoS Biol. 2004 May;2(5):E104.
Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing.
Dunoyer P, Lecellier CH, Parizotto EA, Himber C, Voinnet O.
Plant Cell. 2004 May;16(5):1235-50.
Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of microrna in host gene expression.
Chen J, Li WX, Xie D, Peng JR, Ding SW.
Plant Cell. 2004 May;16(5):1302-13.
Gene regulation: ancient microRNA target sequences in plants.
Floyd SK, Bowman JL.
Nature. 2004 Apr 1;428(6982):485-6.
MicroRNAs: something important between the genes.
Mallory AC, Vaucheret H.
Curr Opin Plant Biol. 2004 Apr;7(2):120-5.
Amphivasal vascular bundle 1, a gain-of-function mutation of the IFL1/REV gene, is associated with alterations in the polarity of leaves,
stems and carpels.
Zhong R, Ye ZH.
Plant Cell Physiol. 2004 Apr;45(4):369-85.
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development.
Chen X.
Science. 2004 Mar 26;303(5666):2022-5.
Identification of 20 microRNAs from Oryza sativa.
Wang JF, Zhou H, Chen YQ, Luo QJ, Qu LH.
Nucleic Acids Res. 2004 Mar 12;32(5):1688-95.
Plant RNAi: How a viral silencing suppressor inactivates siRNA.
Zamore PD.
Curr Biol. 2004 Mar 9;14(5):R198-200.
Spatially restricted microRNA directs leaf polarity through ARGONAUTE1.
Kidner CA, Martienssen RA.
Nature. 2004 Mar 4;428(6978):81-4.
microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity.
Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC.
Nature. 2004 Mar 4;428(6978):84-8.
RNA silencing in plants: a shortcut to functional analysis.
Horiguchi G.
Differentiation. 2004 Mar;72(2-3):65-73.
The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional
transgene silencing.
Vazquez F, Gasciolli V, Crete P, Vaucheret H.
Curr Biol. 2004 Feb 17;14(4):346-51.
The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation.
Han MH, Goud S, Song L, Fedoroff N.
Proc Natl Acad Sci U S A. 2004 Jan 27;101(4):1093-8.
Biochemical dissection of RNA silencing in plants.
Tang G, Zamore PD.
Methods Mol Biol. 2004;257:223-44.
Molecular and genetic mechanisms of floral control.
Jack T.
Plant Cell. 2004;16 Suppl:S1-17.
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets.
Wang XJ, Reyes JL, Chua NH, Gaasterland T.
Genome Biol. 2004;5(9):R65.
A conserved microRNA signal specifies leaf polarity.
Timmermans MC, Juarez MT, Phelps-Durr TL.
Cold Spring Harb Symp Quant Biol. 2004;69:409-17.
Dissection of floral induction pathways using global expression analysis.
Schmid M, Uhlenhaut NH, Godard F, Demar M, Bressan R, Weigel D, Lohmann JU.
Development. 2003 Dec;130(24):6001-12.
Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes.
Aukerman MJ, Sakai H.
Plant Cell. 2003 Nov;15(11):2730-41.
MicroRNAs: a role in plant development.
Hake S.
Curr Biol. 2003 Oct 28;13(21):R851-2.
Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes.
Emery JF, Floyd SK, Alvarez J, Eshed Y, Hawker NP, Izhaki A, Baum SF, Bowman JL.
Curr Biol. 2003 Oct 14;13(20):1768-74.
Control of leaf morphogenesis by microRNAs.
Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D.
Nature. 2003 Sep 18;425(6955):257-63.
miSSING LINKS: miRNAs and plant development.
Hunter C, Poethig RS.
Curr Opin Genet Dev. 2003 Aug;13(4):372-8.
Evidence for nuclear processing of plant micro RNA and short interfering RNA precursors.
Papp I, Mette MF, Aufsatz W, Daxinger L, Schauer SE, Ray A, van der Winden J, Matzke M, Matzke AJ.
Plant Physiol. 2003 Jul;132(3):1382-90.
RNA silencing bridging the gaps in wheat extracts.
Voinnet O.
Trends Plant Sci. 2003 Jul;8(7):307-9.
MicroRNAs: at the root of plant development?
Bartel B, Bartel DP.
Plant Physiol. 2003 Jun;132(2):709-17.
Arabidopsis HEN1: a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and
virus resistance.
Boutet S, Vazquez F, Liu J, Beclin C, Fagard M, Gratias A, Morel JB, Crete P, Chen X, Vaucheret H.
Curr Biol. 2003 May 13;13(10):843-8.
Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation.
Xie Z, Kasschau KD, Carrington JC.
Curr Biol. 2003 Apr 29;13(9):784-9.
Posttranscriptional gene silencing is not compromised in the Arabidopsis CARPEL FACTORY (DICER-LIKE1) mutant, a homolog of
Dicer-1 from Drosophila.
Finnegan EJ, Margis R, Waterhouse PM.
Curr Biol. 2003 Feb 4;13(3):236-40.
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction.
Kasschau KD, Xie Z, Allen E, Llave C, Chapman EJ, Krizan KA, Carrington JC.
Dev Cell. 2003 Feb;4(2):205-17.
A biochemical framework for RNA silencing in plants.
Tang G, Reinhart BJ, Bartel DP, Zamore PD.
Genes Dev. 2003 Jan 1;17(1):49-63.
Macro effects of microRNAs in plants.
Kidner CA, Martienssen RA.
Trends Genet. 2003 Jan;19(1):13-6.
Revealing micro-RNAs in plants.
Jones L.
Trends Plant Sci. 2002 Nov;7(11):473-5.
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA.
Llave C, Xie Z, Kasschau KD, Carrington JC.
Science. 2002 Sep 20;297(5589):2053-6.
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana.
Park W, Li J, Song R, Messing J, Chen X.
Curr Biol. 2002 Sep 3;12(17):1484-95.
Prediction of plant microRNA targets.
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP.
Cell. 2002 Aug 23;110(4):513-20.
MicroRNAs in plants.
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP.
Genes Dev. 2002 Jul 1;16(13):1616-26.