Methods
Micro-RNA quantification using DNA polymerase and pyrophosphate quantification.
Yu HP, Hsiao YL, Pan HY, Huang CH, Hou SY.
Anal Biochem. 2011 Dec 15;419(2):228-33.
Development of hybrid baculovirus vectors for artificial MicroRNA delivery and prolonged gene suppression.
Chen CL, Luo WY, Lo WH, Lin KJ, Sung LY, Shih YS, Chang YH, Hu YC.
Biotechnol Bioeng. 2011 Dec;108(12):2958-67.
Chemical modification and design of anti-miRNA oligonucleotides.
Lennox KA, Behlke MA.
Gene Ther. 2011 Dec;18(12):1111-20.
Label-free high-throughput microRNA expression profiling from total RNA.
Duan D, Zheng KX, Shen Y, Cao R, Jiang L, Lu Z, Yan X, Li J.
Nucleic Acids Res. 2011 Dec;39(22):e154.
A bias-reducing strategy in profiling small RNAs using Solexa.
Sun G, Wu X, Wang J, Li H, Li X, Gao H, Rossi J, Yen Y.
RNA. 2011 Dec;17(12):2256-62.
HistoFlex--a microfluidic device providing uniform flow conditions enabling highly sensitive, reproducible and quantitative in situ
hybridizations.
Søe MJ, Okkels F, Sabourin D, Alberti M, Holmstrøm K, Dufva M.
Lab Chip. 2011 Nov 21;11(22):3896-907.
Direct quantitative analysis of multiple miRNAs (DQAMmiR).
Wegman DW, Krylov SN.
Angew Chem Int Ed Engl. 2011 Oct 24;50(44):10335-9.
Chipster: user-friendly analysis software for microarray and other high-throughput data.
Kallio MA, Tuimala JT, Hupponen T, Klemelä P, Gentile M, Scheinin I, Koski M, Käki J, Korpelainen EI.
BMC Genomics. 2011 Oct 14;12:507.
Evaluation of formalin-free tissue fixation for RNA and microRNA studies.
Arzt L, Kothmaier H, Quehenberger F, Halbwedl I, Wagner K, Maierhofer T, Popper HH.
Exp Mol Pathol. 2011 Oct;91(2):490-5.
Evaluation and identification of reliable reference genes for pharmacogenomics, toxicogenomics, and small RNA expression analysis.
Chen D, Pan X, Xiao P, Farwell MA, Zhang B.
J Cell Physiol. 2011 Oct;226(10):2469-77.
Nanoliter droplet array for microRNA detection based on enzymatic stem-loop probes ligation and SYBR Green real-time PCR.
Yu Z, Zhu Y, Zhang Y, Li J, Fang Q, Xi J, Yao B.
Talanta. 2011 Sep 30;85(4):1760-5.
Identifying targets of human micrornas with the LightSwitch Luciferase Assay System using 3'UTR-reporter constructs and a microRNA
mimic in adherent cells.
Aldred SF, Collins P, Trinklein N.
J Vis Exp. 2011 Sep 28;(55). pii: 3343.
Effective delivery of anti-miRNA DNA oligonucleotides by functionalized gold nanoparticles.
Kim JH, Yeom JH, Ko JJ, Han MS, Lee K, Na SY, Bae J.
J Biotechnol. 2011 Sep 20;155(3):287-92.
SEED: efficient clustering of next-generation sequences.
Bao E, Jiang T, Kaloshian I, Girke T.
Bioinformatics. 2011 Sep 15;27(18):2502-9.
Ultrasensitive multiplexed microRNA quantification on encoded gel microparticles using rolling circle amplification.
Chapin SC, Doyle PS.
Anal Chem. 2011 Sep 15;83(18):7179-85.
Rapid detection of microRNA by a silver nanocluster DNA probe.
Yang SW, Vosch T.
Anal Chem. 2011 Sep 15;83(18):6935-9.
Amplification and sequencing of mature microRNAs in uncharacterized animal models using stem-loop reverse transcription-polymerase
chain reaction.
Biggar KK, Kornfeld SF, Storey KB.
Anal Biochem. 2011 Sep 15;416(2):231-3.
Ultrasensitive quantification of mature microRNAs by real-time PCR based on ligation of a ribonucleotide-modified DNA probe.
Zhang J, Li Z, Wang H, Wang Y, Jia H, Yan J.
Chem Commun (Camb). 2011 Sep 7;47(33):9465-7.
Toward the blood-borne miRNome of human diseases.
Keller A, Leidinger P, Bauer A, Elsharawy A, Haas J, Backes C, Wendschlag A, Giese N, Tjaden C, Ott K, Werner J, Hackert T, Ruprecht
K, Huwer H, Huebers J, Jacobs G, Rosenstiel P, Dommisch H, Schaefer A, Müller-Quernheim J, Wullich B, Keck B, Graf N, Reichrath J,
Vogel B, Nebel A, Jager SU, Staehler P, Amarantos I, Boisguerin V, Staehler C, Beier M, Scheffler M, Büchler MW, Wischhusen J,
Haeusler SF, Dietl J, Hofmann S, Lenhof HP, Schreiber S, Katus HA, Rottbauer W, Meder B, Hoheisel JD, Franke A, Meese E.
Nat Methods. 2011 Sep 4;8(10):841-3.
Barcoding bias in high-throughput multiplex sequencing of miRNA.
Alon S, Vigneault F, Eminaga S, Christodoulou DC, Seidman JG, Church GM, Eisenberg E.
Genome Res. 2011 Sep;21(9):1506-11.
RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries.
Hafner M, Renwick N, Brown M, Mihailović A, Holoch D, Lin C, Pena JT, Nusbaum JD, Morozov P, Ludwig J, Ojo T, Luo S, Schroth G,
Tuschl T.
RNA. 2011 Sep;17(9):1697-712.
Evaluation of two commercial global miRNA expression profiling platforms for detection of less abundant miRNAs.
Jensen SG, Lamy P, Rasmussen MH, Ostenfeld MS, Dyrskjøt L, Orntoft TF, Andersen CL.
BMC Genomics. 2011 Aug 26;12:435.
High-throughput microfluidic single-cell RT-qPCR.
White AK, VanInsberghe M, Petriv OI, Hamidi M, Sikorski D, Marra MA, Piret J, Aparicio S, Hansen CL.
Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):13999-4004.
Quantitative analysis of microRNA in blood serum with protein-facilitated affinity capillary electrophoresis.
Khan N, Cheng J, Pezacki JP, Berezovski MV.
Anal Chem. 2011 Aug 15;83(16):6196-201.
Analytical aspects of microRNA in diagnostics: a review.
de Planell-Saguer M, Rodicio MC.
Anal Chim Acta. 2011 Aug 12;699(2):134-52.
Platinum interference with siRNA non-seed regions fine-tunes silencing capacity.
Hedman HK, Kirpekar F, Elmroth SK.
J Am Chem Soc. 2011 Aug 10;133(31):11977-84.
High throughput microRNA profiling: optimized multiplex qRT-PCR at nanoliter scale on the fluidigm dynamic arrayTM IFCs.
Moltzahn F, Hunkapiller N, Mir AA, Imbar T, Blelloch R.
J Vis Exp. 2011 Aug 3;(54). pii: 2552.
Anti-DNA:RNA antibodies and silicon photonic microring resonators: increased sensitivity for multiplexed microRNA detection.
Qavi AJ, Kindt JT, Gleeson MA, Bailey RC.
Anal Chem. 2011 Aug 1;83(15):5949-56.
Small RNA library preparation for next-generation sequencing by single ligation, extension and circularization technology.
Kwon YS.
Biotechnol Lett. 2011 Aug;33(8):1633-41.
PNA-based artificial nucleases as antisense and anti-miRNA oligonucleotide agents.
Gaglione M, Milano G, Chambery A, Moggio L, Romanelli A, Messere A.
Mol Biosyst. 2011 Aug;7(8):2490-9.
Molecular imaging of microRNAs.
Wang F, Niu G, Chen X, Cao F.
Eur J Nucl Med Mol Imaging. 2011 Aug;38(8):1572-9.
The discovery approaches and detection methods of microRNAs.
Huang Y, Zou Q, Wang SP, Tang SM, Zhang GZ, Shen XJ.
Mol Biol Rep. 2011 Aug;38(6):4125-35.
Creating a flexible multiple microRNA expression vector by linking precursor microRNAs.
Qiu X, Friedman JM, Liang G.
Biochem Biophys Res Commun. 2011 Jul 29;411(2):276-80.
Evaluating target silencing by short hairpin RNA mediated by the group I intron in cultured mammalian cells.
Noguchi K, Ishitu Y, Takaku H.
BMC Biotechnol. 2011 Jul 25;11:79.
A reverse transcription-free real-time PCR assay for rapid miRNAs quantification based on effects of base stacking.
Lu Z, Duan D, Cao R, Zhang L, Zheng K, Li J.
Chem Commun (Camb). 2011 Jul 14;47(26):7452-4.
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory
modules.
Zhang S, Li Q, Liu J, Zhou XJ.
Bioinformatics. 2011 Jul 1;27(13):i401-9.
A growing molecular toolbox for the functional analysis of microRNAs in Caenorhabditis elegans.
Jo J, Esquela-Kerscher A.
Brief Funct Genomics. 2011 Jul;10(4):175-80.
A guide to using RNAi and other nucleotide-based technologies.
Poulin GB.
Brief Funct Genomics. 2011 Jul;10(4):173-4.
miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments.
Hackenberg M, Rodríguez-Ezpeleta N, Aransay AM.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W132-8.
mirConnX: condition-specific mRNA-microRNA network integrator.
Huang GT, Athanassiou C, Benos PV.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W416-23.
mirAct: a web tool for evaluating microRNA activity based on gene expression data.
Liang Z, Zhou H, He Z, Zheng H, Wu J.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W139-44.
miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through
transcriptome profiling.
Plaisier CL, Bare JC, Baliga NS.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W125-31.
Construction and detection of expression vectors of microRNA-9a in BmN cells.
Huang Y, Zou Q, Wang SP, Tang SM, Zhang GZ, Shen XJ.
J Zhejiang Univ Sci B. 2011 Jul;12(7):527-33.
Detection of small RNA molecules by a combination of branched rolling circle amplification and bioluminescent pyrophosphate assay.
Mashimo Y, Mie M, Suzuki S, Kobatake E.
Anal Bioanal Chem. 2011 Jul;401(1):221-7.
Hybridization kinetics analysis of an oligonucleotide microarray for microRNA detection.
Zhao B, Ding S, Li W, Jin Y.
Acta Biochim Biophys Sin (Shanghai). 2011 Jul;43(7):551-5.
Stem-loop RT-qPCR for miRNAs.
Kramer MF.
Curr Protoc Mol Biol. 2011 Jul;Chapter 15:Unit 15.10.
Silencing the silencer: strategies to inhibit microRNA activity.
Reichel M, Li J, Millar AA.
Biotechnol Lett. 2011 Jul;33(7):1285-92.
Analysis of microRNA signatures using size-coded ligation-mediated PCR.
Arefian E, Kiani J, Soleimani M, Shariati SA, Aghaee-Bakhtiari SH, Atashi A, Gheisari Y, Ahmadbeigi N, Banaei-Moghaddam AM, Naderi
M, Namvarasl N, Good L, Faridani OR.
Nucleic Acids Res. 2011 Jul;39(12):e80.
A sensitive alternative for microRNA in situ hybridizations using probes of 2'-O-methyl RNA + LNA.
Søe MJ, Møller T, Dufva M, Holmstrøm K.
J Histochem Cytochem. 2011 Jul;59(7):661-72.
Specific and sensitive quantitative RT-PCR of miRNAs with DNA primers.
Balcells I, Cirera S, Busk PK.
BMC Biotechnol. 2011 Jun 25;11:70.
A microfluidic-assisted microarray for ultrasensitive detection of miRNA under an optical microscope.
Roy S, Soh JH, Gao Z.
Lab Chip. 2011 Jun 7;11(11):1886-94.
HAPIscreen, a method for high-throughput aptamer identification.
Dausse E, Taouji S, Evadé L, Di Primo C, Chevet E, Toulmé JJ.
J Nanobiotechnology. 2011 Jun 3;9:25.
Normalizing bead-based microRNA expression data: a measurement error model-based approach.
Wang B, Wang XF, Xi Y.
Bioinformatics. 2011 Jun 1;27(11):1506-12.
Limiting Ago protein restricts RNAi and microRNA biogenesis during early development in Xenopus laevis.
Lund E, Sheets MD, Imboden SB, Dahlberg JE.
Genes Dev. 2011 Jun 1;25(11):1121-31.
RNAi in Xenopus: look before you leap.
Flynt AS, Lai EC.
Genes Dev. 2011 Jun 1;25(11):1105-8.
The bioinformatics of next generation sequencing: a meeting report.
Shankar R.
J Mol Cell Biol. 2011 Jun;3(3):147-50.
Analysis of circulating microRNA: preanalytical and analytical challenges.
McDonald JS, Milosevic D, Reddi HV, Grebe SK, Algeciras-Schimnich A.
Clin Chem. 2011 Jun;57(6):833-40.
Excavation of a buried treasure--DNA, mRNA, miRNA and protein analysis in formalin fixed, paraffin embedded tissues.
Klopfleisch R, Weiss AT, Gruber AD.
Histol Histopathol. 2011 Jun;26(6):797-810.
miRFam: an effective automatic miRNA classification method based on n-grams and a multiclass SVM.
Ding J, Zhou S, Guan J.
BMC Bioinformatics. 2011 May 28;12:216.
Characterizing the role of miRNAs within gene regulatory networks using integrative genomics techniques.
Su WL, Kleinhanz RR, Schadt EE.
Mol Syst Biol. 2011 May 24;7:490.
A simple Bayesian estimate of direct RNAi gene regulation events from differential gene expression profiles.
Wilson PA, Plucinski M.
BMC Genomics. 2011 May 20;12:250.
Exponential amplification for chemiluminescence resonance energy transfer detection of microRNA in real samples based on a cross-
catalyst strand-displacement network.
Bi S, Zhang J, Hao S, Ding C, Zhang S.
Anal Chem. 2011 May 15;83(10):3696-702.
Ultrasensitive microarray detection of short RNA sequences with enzymatically modified nanoparticles and surface plasmon resonance
imaging measurements.
Zhou WJ, Chen Y, Corn RM.
Anal Chem. 2011 May 15;83(10):3897-902.
An enzyme-linked assay for the rapid quantification of microRNAs based on the viral suppressor of RNA silencing protein p19.
Nasheri N, Cheng J, Singaravelu R, Wu P, McDermott MT, Pezacki JP.
Anal Biochem. 2011 May 15;412(2):165-72.
A non-specific effect associated with conditional transgene expression based on Cre-loxP strategy in mice.
Qiu L, Rivera-Pérez JA, Xu Z.
PLoS One. 2011 May 10;6(5):e18778.
Multiplexed microRNA detection by capillary electrophoresis with laser-induced fluorescence.
Jiang RM, Chang YS, Chen SJ, Chen JH, Chen HC, Chang PL.
J Chromatogr A. 2011 May 6;1218(18):2604-10.
A comprehensive study of multiple mapping and feature selection for correction strategy in the analysis of small RNAs from SOLiD
sequencing.
Guo L, Liang T, Lu Z.
Biosystems. 2011 May-Jun;104(2-3):87-93.
Long-term ex vivo monitoring of in vivo microRNA activity in liver using a secreted luciferase sensor.
Wang G, Dong X, Hu J, Tian W, Yuchi J, Wang Y, Wu X.
Sci China Life Sci. 2011 May;54(5):418-25.
The use of polyethylenimine-grafted graphene nanoribbon for cellular delivery of locked nucleic acid modified molecular beacon for
recognition of microRNA.
Dong H, Ding L, Yan F, Ji H, Ju H.
Biomaterials. 2011 May;32(15):3875-82.
MicroRNAs as participants in cytotoxicity of CdTe quantum dots in NIH/3T3 cells.
Li S, Wang Y, Wang H, Bai Y, Liang G, Wang Y, Huang N, Xiao Z.
Biomaterials. 2011 May;32(15):3807-14.
RNA interference in pigs: comparison of RNAi test systems and expression vectors.
Merkl C, Leuchs S, Saalfrank A, Kind A, Schnieke A.
Mol Biotechnol. 2011 May;48(1):38-48.
A genome-scale shRNA resource for transgenic RNAi in Drosophila.
Ni JQ, Zhou R, Czech B, Liu LP, Holderbaum L, Yang-Zhou D, Shim HS, Tao R, Handler D, Karpowicz P, Binari R, Booker M, Brennecke
J, Perkins LA, Hannon GJ, Perrimon N.
Nat Methods. 2011 May;8(5):405-7.
MicroRNA fate upon targeting with anti-miRNA oligonucleotides as revealed by an improved Northern-blot-based method for miRNA
detection.
Torres AG, Fabani MM, Vigorito E, Gait MJ.
RNA. 2011 May;17(5):933-43.
Nanolitre droplet array for real time reverse transcription polymerase chain reaction.
Zhang Y, Zhu Y, Yao B, Fang Q.
Lab Chip. 2011 Apr 21;11(8):1545-9.
Dye-free microRNA quantification by using pyrosequencing with a sequence-tagged stem-loop RT primer.
Jing H, Song Q, Chen Z, Zou B, Chen C, Zhu M, Zhou G, Kajiyama T, Kambara H.
Chembiochem. 2011 Apr 11;12(6):845-9.
Northern blotting analysis of microRNAs, their precursors and RNA interference triggers.
Koscianska E, Starega-Roslan J, Sznajder LJ, Olejniczak M, Galka-Marciniak P, Krzyzosiak WJ.
BMC Mol Biol. 2011 Apr 11;12:14.
A rapid and scalable system for studying gene function in mice using conditional RNA interference.
Premsrirut PK, Dow LE, Kim SY, Camiolo M, Malone CD, Miething C, Scuoppo C, Zuber J, Dickins RA, Kogan SC, Shroyer KR, Sordella
R, Hannon GJ, Lowe SW.
Cell. 2011 Apr 1;145(1):145-58.
Effective gene silencing in Drosophila ovarian germline by artificial microRNAs.
Wang H, Mu Y, Chen D.
Cell Res. 2011 Apr;21(4):700-3.
High-throughput analysis of gene expression on tissue sections by in situ hybridization.
Eichele G, Diez-Roux G.
Methods. 2011 Apr;53(4):417-23.
Clustering with exclusion zones: genomic applications.
Segal MR, Xiao Y, Huffer FW.
Biostatistics. 2011 Apr;12(2):234-46.
[An original approach to enrich cDNA libraries with functional non-coding RNAs].
Rederstorff M.
Med Sci (Paris). 2011 Apr;27(4):343-5.
Comprehensive human adipose tissue mRNA and microRNA endogenous control selection for quantitative real-time-PCR normalization.
Neville MJ, Collins JM, Gloyn AL, McCarthy MI, Karpe F.
Obesity (Silver Spring). 2011 Apr;19(4):888-92.
Design of small molecule-responsive microRNAs based on structural requirements for Drosha processing.
Beisel CL, Chen YY, Culler SJ, Hoff KG, Smolke CD.
Nucleic Acids Res. 2011 Apr;39(7):2981-94.
Effective sample selection for classification of pre-miRNAs.
Han K.
Genet Mol Res. 2011 Mar 29;10(1):506-18.
Stopping RNA interference at the seed.
Rossi JJ.
Nat Genet. 2011 Mar 29;43(4):288-9.
In-vivo quantification of primary microRNA processing by Drosha with a luciferase based system.
Allegra D, Mertens D.
Biochem Biophys Res Commun. 2011 Mar 25;406(4):501-5.
Silencing of microRNA families by seed-targeting tiny LNAs.
Obad S, dos Santos CO, Petri A, Heidenblad M, Broom O, Ruse C, Fu C, Lindow M, Stenvang J, Straarup EM, Hansen HF, Koch T,
Pappin D, Hannon GJ, Kauppinen S.
Nat Genet. 2011 Mar 20;43(4):371-8.
Functional identification of optimized RNAi triggers using a massively parallel sensor assay.
Fellmann C, Zuber J, McJunkin K, Chang K, Malone CD, Dickins RA, Xu Q, Hengartner MO, Elledge SJ, Hannon GJ, Lowe SW.
Mol Cell. 2011 Mar 18;41(6):733-46.
MicroRNA profiling by simultaneous selective isotachophoresis and hybridization with molecular beacons.
Persat A, Santiago JG.
Anal Chem. 2011 Mar 15;83(6):2310-6.
Quantitative miRNA expression analysis using fluidigm microfluidics dynamic arrays.
Jang JS, Simon VA, Feddersen RM, Rakhshan F, Schultz DA, Zschunke MA, Lingle WL, Kolbert CP, Jen J.
BMC Genomics. 2011 Mar 9;12:144.
One-step ultrasensitive detection of microRNAs with loop-mediated isothermal amplification (LAMP).
Li C, Li Z, Jia H, Yan J.
Chem Commun (Camb). 2011 Mar 7;47(9):2595-7.
Rapid microRNA profiling on encoded gel microparticles.
Chapin SC, Appleyard DC, Pregibon DC, Doyle PS.
Angew Chem Int Ed Engl. 2011 Mar 1;50(10):2289-93.
Improved specificity of gene silencing by siRNAs containing unlocked nucleobase analogs.
Vaish N, Chen F, Seth S, Fosnaugh K, Liu Y, Adami R, Brown T, Chen Y, Harvie P, Johns R, Severson G, Granger B, Charmley P, Houston
M, Templin MV, Polisky B.
Nucleic Acids Res. 2011 Mar 1;39(5):1823-32.
Observation of miRNA gene expression in zebrafish embryos by in situ hybridization to microRNA primary transcripts.
He X, Yan YL, DeLaurier A, Postlethwait JH.
Zebrafish. 2011 Mar;8(1):1-8.
Hierarchical generative biclustering for microRNA expression analysis.
Caldas J, Kaski S.
J Comput Biol. 2011 Mar;18(3):251-61.
Silencing microRNA by interfering nanoparticles in mice.
Su J, Baigude H, McCarroll J, Rana TM.
Nucleic Acids Res. 2011 Mar;39(6):e38.
Molecular beacon-based bioimaging of multiple microRNAs during myogenesis.
Kang WJ, Cho YL, Chae JR, Lee JD, Choi KJ, Kim S.
Biomaterials. 2011 Mar;32(7):1915-22.
Optimization of a microRNA expression vector for function analysis of microRNA.
Furukawa N, Sakurai F, Katayama K, Seki N, Kawabata K, Mizuguchi H.
J Control Release. 2011 Feb 28;150(1):94-101.
Circular single-stranded synthetic DNA delivery vectors for microRNA.
Seidl CI, Ryan K.
PLoS One. 2011 Feb 16;6(2):e16925.
Amplified detection of microRNA based on ruthenium oxide nanoparticle-initiated deposition of an insulating film.
Peng Y, Gao Z.
Anal Chem. 2011 Feb 1;83(3):820-7.
[Construction and application of inducible artificial microRNA expression vector targeting eIF3g gene].
Chu LS, Han N, Song XY, Cao J.
Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi. 2011 Feb;27(2):135-8.
A facile method to increase titers of miRNA-encoding retroviruses by inhibition of the RNaseIII enzyme Drosha.
Brandl A, Wittmann J, Jäck HM.
Eur J Immunol. 2011 Feb;41(2):549-51.
MicroRNA microarrays on archive bone marrow core biopsies of leukemias--method validation.
Borze I, Guled M, Musse S, Raunio A, Elonen E, Saarinen-Pihkala U, Karjalainen-Lindsberg ML, Lahti L, Knuutila S.
Leuk Res. 2011 Feb;35(2):188-95.
miR-ID: a novel, circularization-based platform for detection of microRNAs.
Kumar P, Johnston BH, Kazakov SA.
RNA. 2011 Feb;17(2):365-80.
Pre-processing and differential expression analysis of Agilent microRNA arrays using the AgiMicroRna Bioconductor library.
López-Romero P.
BMC Genomics. 2011 Jan 26;12:64.
Vigilance and validation: Keys to success in RNAi screening.
Sigoillot FD, King RW.
ACS Chem Biol. 2011 Jan 21;6(1):47-60.
High-resolution northern blot for a reliable analysis of microRNAs and their precursors.
Koscianska E, Starega-Roslan J, Czubala K, Krzyzosiak WJ.
ScientificWorldJournal. 2011 Jan 5;11:102-17.
Automatic genomics: a user-friendly program for the automatic designing and plate loading of medium-throughput qPCR experiments.
Callejas S, Alvarez R, Dopazo A.
Biotechniques. 2011 Jan;50(1):46-50.
OTS highlights advance in basic and translational aspects of oligonucleotide research.
Rossi JJ.
Mol Ther. 2011 Jan;19(1):1-2.
MicroRNA expression profiling of specific cells in complex archival tissue stained by immunohistochemistry.
Schuster C, Budczies J, Faber C, Kirchner T, Hlubek F.
Lab Invest. 2011 Jan;91(1):157-65.
Analysis of microRNA expression and function.
Van Wynsberghe PM, Chan SP, Slack FJ, Pasquinelli AE.
Methods Cell Biol. 2011;106:219-52.
Gene-centered regulatory network mapping.
Walhout AJ.
Methods Cell Biol. 2011;106:271-88.
A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets.
Cheng C, Yan KK, Yip KY, Rozowsky J, Alexander R, Shou C, Gerstein M.
Genome Biol. 2011;12(2):R15.
MIRTFnet: analysis of miRNA regulated transcription factors.
Naeem H, Küffner R, Zimmer R.
PLoS One. 2011;6(8):e22519.
Neuropeptide RNA localization in tissue sections.
Landry M, Salam SA, Moftah M.
Methods Mol Biol. 2011;789:73-87.
Haemolysis during sample preparation alters microRNA content of plasma.
Kirschner MB, Kao SC, Edelman JJ, Armstrong NJ, Vallely MP, van Zandwijk N, Reid G.
PLoS One. 2011;6(9):e24145.
Discerning different in vivo roles of microRNAs by experimental approaches in zebrafish.
Pase L, Lieschke GJ.
Methods Cell Biol. 2011;104:353-78.
Disease modeling by gene targeting using microRNAs.
Lan CC, Leong IU, Lai D, Love DR.
Methods Cell Biol. 2011;105:419-36.
MicroRNA expression analysis: techniques suitable for studies of intercellular and extracellular microRNAs.
Hennessy E, O'Driscoll L.
Methods Mol Biol. 2011;784:99-107.
Isolation of exosomes for subsequent mRNA, MicroRNA, and protein profiling.
Rani S, O'Brien K, Kelleher FC, Corcoran C, Germano S, Radomski MW, Crown J, O'Driscoll L.
Methods Mol Biol. 2011;784:181-95.
Specific gene silencing using RNAi in cell culture.
Yang C, Qiu L, Xu Z.
Methods Mol Biol. 2011;793:457-77.
Expression of multiple artificial microRNAs from a chicken miRNA126-based lentiviral vector.
Chen SC, Stern P, Guo Z, Chen J.
PLoS One. 2011;6(7):e22437.
Quantitative proteomics identify novel miR-155 target proteins.
Lössner C, Meier J, Warnken U, Rogers MA, Lichter P, Pscherer A, Schnölzer M.
PLoS One. 2011;6(7):e22146.
MicroRNA profiling using RNA from microdissected immunostained tissue.
Bockmeyer CL, Jonigk D, Kreipe H, Lehmann U.
Methods Mol Biol. 2011;755:85-94.
Impact of cellular miRNAs on circulating miRNA biomarker signatures.
Duttagupta R, Jiang R, Gollub J, Getts RC, Jones KW.
PLoS One. 2011;6(6):e20769.
Antibody targeted siRNA delivery.
Toloue MM, Ford LP.
Methods Mol Biol. 2011;764:123-39.
Quantification of siRNAs in vitro and in vivo.
Cheng A, Vlassov AV, Magdaleno S.
Methods Mol Biol. 2011;764:183-97.
Small RNA discovery and characterisation in eukaryotes using high-throughput approaches.
Pais H, Moxon S, Dalmay T, Moulton V.
Adv Exp Med Biol. 2011;722:239-54.
Combining multiple perspective as intelligent agents into robust approach for biomarker detection in gene expression data.
Alshalalfa M, Naji G, Qabaja A, Alhajj R, Rokne J.
Int J Data Min Bioinform. 2011;5(3):332-50.
Engineering RNAi circuits.
Benenson Y.
Methods Enzymol. 2011;497:187-205.
Biochemical analyzes of endogenous argonaute complexes immunopurified with anti-Argonaute monoclonal antibodies.
Miyoshi K, Okada TN, Siomi H, Siomi MC.
Methods Mol Biol. 2011;725:29-43.
Detection of human Dicer and Argonaute 2 catalytic activity.
Perron MP, Landry P, Plante I, Provost P.
Methods Mol Biol. 2011;725:121-41.
Artificial tethering of Argonaute proteins for studying their role in translational repression of target mRNAs.
Eckhardt S, Szostak E, Yang Z, Pillai R.
Methods Mol Biol. 2011;725:191-206.
An efficient system for let-7 microRNA and GW182 protein-mediated deadenylation in vitro.
Fabian MR, Svitkin YV, Sonenberg N.
Methods Mol Biol. 2011;725:207-17.
Cell-free microRNA-mediated translation repression in Caenorhabditis elegans.
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