Methods
A knowledge-based weighting framework to boost the power of genome-wide association studies.
Li MX, Sham PC, Cherny SS, Song YQ.
PLoS One. 2010 Dec 31;5(12):e14480.
A highly sensitive microRNA biosensor based on ruthenium oxide nanoparticle-initiated polymerization of aniline.
Peng Y, Yi G, Gao Z.
Chem Commun (Camb). 2010 Dec 28;46(48):9131-3.
New methods for next generation sequencing based microRNA expression profiling.
Buermans HP, Ariyurek Y, van Ommen G, den Dunnen JT, 't Hoen PA.
BMC Genomics. 2010 Dec 20;11:716.
Surface plasmon resonance biosensor for rapid label-free detection of microribonucleic acid at subfemtomole level.
Sípová H, Zhang S, Dudley AM, Galas D, Wang K, Homola J.
Anal Chem. 2010 Dec 15;82(24):10110-5.
Profiling of pre-micro RNAs and microRNAs using quantitative real-time PCR (qPCR) arrays.
Chugh P, Tamburro K, Dittmer DP.
J Vis Exp. 2010 Dec 3;(46). pii: 2210.
Quantification of global microRNA abundance by selective isotachophoresis.
Persat A, Chivukula RR, Mendell JT, Santiago JG.
Anal Chem. 2010 Dec 1;82(23):9631-5.
Detection of microRNAs in dried serum blots.
Patnaik SK, Mallick R, Yendamuri S.
Anal Biochem. 2010 Dec 1;407(1):147-9.
Lentivirus-mediated reprogramming of somatic cells in the absence of transgenic transcription factors.
Kane NM, Nowrouzi A, Mukherjee S, Blundell MP, Greig JA, Lee WK, Houslay MD, Milligan G, Mountford JC, von Kalle C, Schmidt M,
Thrasher AJ, Baker AH.
Mol Ther. 2010 Dec;18(12):2139-45.
A novel ultrasensitive hybridization-based ELISA method for 2-methoxyphosphorothiolate microRNAs and its in vitro and in vivo application.
Chan KK, Liu Z, Xie Z, Chiu M, Wang H, Chen P, Dunkerson S, Chiu M, Liu S, Triantafillou G, Garzon R, Croce CM, Byrd JC, Muthusamy
N, Marcucci G.
AAPS J. 2010 Dec;12(4):556-68.
A simple procedure for routine RNA extraction and miRNA array analyses from a single thyroid in vivo fine needle aspirate.
Rossing M, Kaczkowski B, Futoma-Kazmierczak E, Glud M, Klausen M, Faber J, Nygaard B, Kiss K, Sørensen CH, Nielsen FC,
Bennedbæk FN, Friis-Hansen L.
Scand J Clin Lab Invest. 2010 Dec;70(8):529-34.
Robust one-day in situ hybridization protocol for detection of microRNAs in paraffin samples using LNA probes.
Jørgensen S, Baker A, Møller S, Nielsen BS.
Methods. 2010 Dec;52(4):375-81.
In situ detection of microRNAs in paraffin embedded, formalin fixed tissues and the co-localization of their putative targets.
Nuovo GJ.
Methods. 2010 Dec;52(4):307-15.
The search for an optimal DNA, RNA, and protein detection by in situ hybridization, immunohistochemistry, and solution-based methods.
Yan F, Wu X, Crawford M, Duan W, Wilding EE, Gao L, Nana-Sinkam SP, Villalona-Calero MA, Baiocchi RA, Otterson GA.
Methods. 2010 Dec;52(4):281-6.
Cellular context in epigenetics: quantitative multicolor imaging and automated per-cell analysis of miRNAs and their putative targets.
Mansfield JR.
Methods. 2010 Dec;52(4):271-80.
Bioresponsive hyperbranched polymers for siRNA and miRNA delivery.
Rahbek UL, Nielsen AF, Dong M, You Y, Chauchereau A, Oupicky D, Besenbacher F, Kjems J, Howard KA.
J Drug Target. 2010 Dec;18(10):812-20.
Normalization strategies for microRNA profiling experiments: a 'normal' way to a hidden layer of complexity?
Meyer SU, Pfaffl MW, Ulbrich SE.
Biotechnol Lett. 2010 Dec;32(12):1777-88.
Optimization of enzymatic reaction conditions for generating representative pools of cDNA from small RNA.
Munafó DB, Robb GB.
RNA. 2010 Dec;16(12):2537-52.
Modified least-variant set normalization for miRNA microarray.
Suo C, Salim A, Chia KS, Pawitan Y, Calza S.
RNA. 2010 Dec;16(12):2293-303.
SylArray: a web server for automated detection of miRNA effects from expression data.
Bartonicek N, Enright AJ.
Bioinformatics. 2010 Nov 15;26(22):2900-1.
“Locked onto the target”: increasing the efficiency of antagomirzymes using locked nucleic acid modifications.
Kaur H, Scaria V, Maiti S.
Biochemistry. 2010 Nov 9;49(44):9449-56.
Fabrication of a structure-specific RNA binder for array detection of label-free microRNA.
Lee JM, Cho H, Jung Y.
Angew Chem Int Ed Engl. 2010 Nov 8;49(46):8662-5.
Revealing biological information using data structuring and automated learning.
Mohorianu I, Moulton V.
Recent Pat DNA Gene Seq. 2010 Nov 1;4(3):181-91.
RNA silencing.
Nicolas FE.
Recent Pat DNA Gene Seq. 2010 Nov 1;4(3):141.
Sizing up the future of microRNA analysis.
Qavi AJ, Kindt JT, Bailey RC.
Anal Bioanal Chem. 2010 Nov;398(6):2535-49.
Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.
Wanunu M, Dadosh T, Ray V, Jin J, McReynolds L, Drndić M.
Nat Nanotechnol. 2010 Nov;5(11):807-14.
[Development of recombinant adenovirus carrying microRNA-regulated gene expression system].
Sakurai F, Mizuguchi H.
Yakugaku Zasshi. 2010 Nov;130(11):1497-504.
MicroRNA sponges: progress and possibilities.
Ebert MS, Sharp PA.
RNA. 2010 Nov;16(11):2043-50.
MicroRNA-integrated and network-embedded gene selection with diffusion distance.
Huang D, Zhou X, Lyon CJ, Hsueh WA, Wong ST.
PLoS One. 2010 Oct 29;5(10):e13748.
Controlled expression of functional miR-122 with a ligand inducible expression system.
Shea CM, Tzertzinis G.
BMC Biotechnol. 2010 Oct 20;10:76.
miRNAkey: a software for microRNA deep sequencing analysis.
Ronen R, Gan I, Modai S, Sukacheov A, Dror G, Halperin E, Shomron N.
Bioinformatics. 2010 Oct 15;26(20):2615-6.
Isothermal sensitive detection of microRNA using an autonomous DNA machine recycling output as input.
Ogawa A.
Bioorg Med Chem Lett. 2010 Oct 15;20(20):6056-60.
Geoseq: a tool for dissecting deep-sequencing datasets.
Gurtowski J, Cancio A, Shah H, Levovitz C, George A, Homann R, Sachidanandam R.
BMC Bioinformatics. 2010 Oct 12;11:506.
A direct comparison of strategies for combinatorial RNA interference.
Lambeth LS, Van Hateren NJ, Wilson SA, Nair V.
BMC Mol Biol. 2010 Oct 11;11:77.
NoiseMaker: simulated screens for statistical assessment.
Kwan P, Birmingham A.
Bioinformatics. 2010 Oct 1;26(19):2484-5.
Modulation of microRNA function by synthetic ribozymes.
Suryawanshi H, Scaria V, Maiti S.
Mol Biosyst. 2010 Oct 1;6(10):1807-9.
Inaugural Genomics Automation Congress and the coming deluge of sequencing data.
Creighton CJ.
Expert Rev Mol Diagn. 2010 Oct;10(7):849-51.
Novel animal models for studying complex brain disorders: BAC-driven miRNA-mediated in vivo silencing of gene expression.
Garbett KA, Horváth S, Ebert PJ, Schmidt MJ, Lwin K, Mitchell A, Levitt P, Mirnics K.
Mol Psychiatry. 2010 Oct;15(10):987-95.
PNA-based antisense oligonucleotides for micrornas inhibition in the absence of a transfection reagent.
Oh SY, Ju Y, Kim S, Park H.
Oligonucleotides. 2010 Oct;20(5):225-30.
Viral vector-mediated RNA interference.
Couto LB, High KA.
Curr Opin Pharmacol. 2010 Oct;10(5):534-42.
Is increasing the copy number of the microRNA precursor in a vector really helpful for further improving the level of mature microRNA in
stable cells?
Wang F, Yang F, Zhang L, Sun S.
Hepatology. 2010 Oct;52(4):1517
Selective cell death mediated by small conditional RNAs.
Venkataraman S, Dirks RM, Ueda CT, Pierce NA.
Proc Natl Acad Sci U S A. 2010 Sep 28;107(39):16777-82.
A novel statistic for genome-wide interaction analysis.
Wu X, Dong H, Luo L, Zhu Y, Peng G, Reveille JD, Xiong M.
PLoS Genet. 2010 Sep 23;6(9).
Sequencing bias: comparison of different protocols of microRNA library construction.
Tian G, Yin X, Luo H, Xu X, Bolund L, Zhang X.
BMC Biotechnol. 2010 Sep 6;10:64.
Quantitative analysis of conditional gene inactivation using rationally designed, tetracycline-controlled miRNAs.
Berger SM, Pesold B, Reber S, Schönig K, Berger AJ, Weidenfeld I, Miao J, Berger MR, Gruss OJ, Bartsch D.
Nucleic Acids Res. 2010 Sep 1;38(17):e168.
Rationally designed logic integration of regulatory signals in mammalian cells.
Leisner M, Bleris L, Lohmueller J, Xie Z, Benenson Y.
Nat Nanotechnol. 2010 Sep;5(9):666-70.
Nanobiotechnology: Scaling up synthetic gene circuits.
Chalancon G, Babu MM.
Nat Nanotechnol. 2010 Sep;5(9):631-3.
A direct comparison of anti-microRNA oligonucleotide potency.
Lennox KA, Behlke MA.
Pharm Res. 2010 Sep;27(9):1788-99.
Developments in real-time PCR research and molecular diagnostics.
Bustin SA.
Expert Rev Mol Diagn. 2010 Sep;10(6):713-5.
Comparative studies of various artificial microRNA expression vectors for RNAi in mammalian cells.
Hu T, Chen P, Fu Q, Liu Y, Ishaq M, Li J, Ma L, Guo D.
Mol Biotechnol. 2010 Sep;46(1):34-40.
MicroRNA profiling: separating signal from noise.
Baker M.
Nat Methods. 2010 Sep;7(9):687-92.
Direct quantification of single-molecules of microRNA by total internal reflection fluorescence microscopy.
Chan HM, Chan LS, Wong RN, Li HW.
Anal Chem. 2010 Aug 15;82(16):6911-8.
TAM: a method for enrichment and depletion analysis of a microRNA category in a list of microRNAs.
Lu M, Shi B, Wang J, Cao Q, Cui Q.
BMC Bioinformatics. 2010 Aug 9;11:419.
Quantitative estimation of multiple miRNAs and mRNAs from a single cell.
Joglekar MV, Wei C, Hardikar AA.
Cold Spring Harb Protoc. 2010 Aug 1;2010(8):pdb.prot5478.
Introducing knowledge into differential expression analysis.
Szczurek E, Biecek P, Tiuryn J, Vingron M.
J Comput Biol. 2010 Aug;17(8):953-67.
A dumbbell probe-mediated rolling circle amplification strategy for highly sensitive microRNA detection.
Zhou Y, Huang Q, Gao J, Lu J, Shen X, Fan C.
Nucleic Acids Res. 2010 Aug;38(15):e156.
Towards computational prediction of microRNA function and activity.
Ulitsky I, Laurent LC, Shamir R.
Nucleic Acids Res. 2010 Aug;38(15):e160.
Exploring microRNA functions in zebrafish.
Fjose A, Zhao XF.
N Biotechnol. 2010 Jul 31;27(3):250-5.
Ultrasensitive detection of microRNAs by exponential isothermal amplification.
Jia H, Li Z, Liu C, Cheng Y.
Angew Chem Int Ed Engl. 2010 Jul 26;49(32):5498-501.
Evaluation of normalization methods for two-channel microRNA microarrays.
Zhao Y, Wang E, Liu H, Rotunno M, Koshiol J, Marincola FM, Landi MT, McShane LM.
J Transl Med. 2010 Jul 21;8:69.
Combined use of RNAi strategies with in vitro mouse limb bud culture.
Zhu Y, Zhu J, Wan X, Zhu Y, Zhang T.
J Exp Zool B Mol Dev Evol. 2010 Jul 15;314(5):412-6.
A novel method for constructing pathogen-regulated small RNA cDNA library.
Sun CB, Du XM, He YK.
Biochem Biophys Res Commun. 2010 Jul 2;397(3):532-6.
DynaMod: dynamic functional modularity analysis.
Sun CH, Hwang T, Oh K, Yi GS.
Nucleic Acids Res. 2010 Jul 1;38 Suppl:W103-8.
DSAP: deep-sequencing small RNA analysis pipeline.
Huang PJ, Liu YC, Lee CC, Lin WC, Gan RR, Lyu PC, Tang P.
Nucleic Acids Res. 2010 Jul 1;38 Suppl:W385-91.
ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological
systems.
Kaimal V, Bardes EE, Tabar SC, Jegga AG, Aronow BJ.
Nucleic Acids Res. 2010 Jul 1;38 Suppl:W96-102.
MAGIA, a web-based tool for miRNA and Genes Integrated Analysis.
Sales G, Coppe A, Bisognin A, Biasiolo M, Bortoluzzi S, Romualdi C.
Nucleic Acids Res. 2010 Jul 1;38 Suppl:W352-9.
Efficient inhibition of miR-155 function in vivo by peptide nucleic acids.
Fabani MM, Abreu-Goodger C, Williams D, Lyons PA, Torres AG, Smith KG, Enright AJ, Gait MJ, Vigorito E.
Nucleic Acids Res. 2010 Jul;38(13):4466-75.
Designing small multiple-target artificial RNAs.
De Guire V, Caron M, Scott N, Ménard C, Gaumont-Leclerc MF, Chartrand P, Major F, Ferbeyre G.
Nucleic Acids Res. 2010 Jul;38(13):e140.
Titers of lentiviral vectors encoding shRNAs and miRNAs are reduced by different mechanisms that require distinct repair strategies.
Liu YP, Vink MA, Westerink JT, Ramirez de Arellano E, Konstantinova P, Ter Brake O, Berkhout B.
RNA. 2010 Jul;16(7):1328-39.
High-performance quantification of mature microRNAs by real-time RT-PCR using deoxyuridine-incorporated oligonucleotides and hemi-
nested primers.
Wan G, Lim QE, Too HP.
RNA. 2010 Jul;16(7):1436-45.
Emergence of chemical biology approaches to the RNAi/miRNA pathway.
Li Y, He C, Jin P.
Chem Biol. 2010 Jun 25;17(6):584-9.
Optimization and analysis of a quantitative real-time PCR-based technique to determine microRNA expression in formalin-fixed paraffin-
embedded samples.
Goswami RS, Waldron L, Machado J, Cervigne NK, Xu W, Reis PP, Bailey DJ, Jurisica I, Crump MR, Kamel-Reid S.
BMC Biotechnol. 2010 Jun 23;10:47.
Multiplexed detection and label-free quantitation of microRNAs using arrays of silicon photonic microring resonators.
Qavi AJ, Bailey RC.
Angew Chem Int Ed Engl. 2010 Jun 21;49(27):4608-11.
An aptamer targeting the apical-loop domain modulates pri-miRNA processing.
Lünse CE, Michlewski G, Hopp CS, Rentmeister A, Cáceres JF, Famulok M, Mayer G.
Angew Chem Int Ed Engl. 2010 Jun 21;49(27):4674-7.
New miRNA labeling method for bead-based quantification.
Biscontin A, Casara S, Cagnin S, Tombolan L, Rosolen A, Lanfranchi G, De Pittà C.
BMC Mol Biol. 2010 Jun 16;11:44.
Electrochemical detection of microRNAs via gap hybridization assay.
Pöhlmann C, Sprinzl M.
Anal Chem. 2010 Jun 1;82(11):4434-40.
Fluorescent metal nanoshell probe to detect single miRNA in lung cancer cell.
Zhang J, Fu Y, Mei Y, Jiang F, Lakowicz JR.
Anal Chem. 2010 Jun 1;82(11):4464-71.
[A novel method for monitoring miRNA activity by expression changes of secreted luciferase gene in live cells].
Tian W, Dong X, Wang G, Wu X.
Sheng Wu Gong Cheng Xue Bao. 2010 Jun;26(6):809-16.
Global expression analysis of miRNA gene cluster and family based on isomiRs from deep sequencing data.
Guo L, Lu Z.
Comput Biol Chem. 2010 Jun;34(3):165-71.
Toward understanding the informatics and statistical aspects of micro-RNA profiling.
Sarver AL.
J Cardiovasc Transl Res. 2010 Jun;3(3):204-11.
Protein mediated miRNA detection and siRNA enrichment using p19.
Jin J, Cid M, Poole CB, McReynolds LA.
Biotechniques. 2010 Jun;48(6):xvii-xxiii.
Robust microRNA stability in degraded RNA preparations from human tissue and cell samples.
Jung M, Schaefer A, Steiner I, Kempkensteffen C, Stephan C, Erbersdobler A, Jung K.
Clin Chem. 2010 Jun;56(6):998-1006.
Cross-platform analysis of global microRNA expression technologies.
Yauk CL, Rowan-Carroll A, Stead JD, Williams A.
BMC Genomics. 2010 May 26;11:330.
Label-free SERS detection of microRNA based on affinity for an unmodified silver nanorod array substrate.
Driskell JD, Tripp RA.
Chem Commun (Camb). 2010 May 21;46(19):3298-300.
Detecting microRNA activity from gene expression data.
Madden SF, Carpenter SB, Jeffery IB, Björkbacka H, Fitzgerald KA, O'Neill LA, Higgins DG.
BMC Bioinformatics. 2010 May 18;11:257.
MicroRNA markers for forensic body fluid identification obtained from microarray screening and quantitative RT-PCR confirmation.
Zubakov D, Boersma AW, Choi Y, van Kuijk PF, Wiemer EA, Kayser M.
Int J Legal Med. 2010 May;124(3):217-26.
Bead array-based microrna expression profiling of peripheral blood and the impact of different RNA isolation approaches.
Gaarz A, Debey-Pascher S, Classen S, Eggle D, Gathof B, Chen J, Fan JB, Voss T, Schultze JL, Staratschek-Jox A.
J Mol Diagn. 2010 May;12(3):335-44.
Reduced seed region-based off-target activity with lentivirus-mediated RNAi.
Klinghoffer RA, Magnus J, Schelter J, Mehaffey M, Coleman C, Cleary MA.
RNA. 2010 May;16(5):879-84.
Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential
microRNA expression.
Git A, Dvinge H, Salmon-Divon M, Osborne M, Kutter C, Hadfield J, Bertone P, Caldas C.
RNA. 2010 May;16(5):991-1006.
Improved microarray-based decision support with graph encoded interactome data.
Daemen A, Signoretto M, Gevaert O, Suykens JA, De Moor B.
PLoS One. 2010 Apr 19;5(4):e10225
A mammalian reporter system for fast and quantitative detection of intracellular A-to-I RNA editing levels.
Gommans WM, McCane J, Nacarelli GS, Maas S.
Anal Biochem. 2010 Apr 15;399(2):230-6.
Simple and sensitive detection of microRNAs with ligase chain reaction.
Yan J, Li Z, Liu C, Cheng Y.
Chem Commun (Camb). 2010 Apr 14;46(14):2432-4.
A miR-21 hairpin structure-based gene knockdown vector.
Yue J, Sheng Y, Ren A, Penmatsa S.
Biochem Biophys Res Commun. 2010 Apr 9;394(3):667-72.
Membrane-based hybridization capture of intracellular peptide nucleic acid.
Shin D, Nam M, Yoon Y, Kim M.
Anal Biochem. 2010 Apr 1;399(1):135-7.
Strengths and limitations of laboratory procedures for microRNA detection.
Koshiol J, Wang E, Zhao Y, Marincola F, Landi MT.
Cancer Epidemiol Biomarkers Prev. 2010 Apr;19(4):907-11.
Development of a low-cost detection method for miRNA microarray.
Li W, Zhao B, Jin Y, Ruan K.
Acta Biochim Biophys Sin (Shanghai). 2010 Apr;42(4):296-301.
Lost in the space of bioinformatic tools: a constantly updated survival guide for genetic epidemiology. The GenEpi Toolbox.
Coassin S, Brandstätter A, Kronenberg F.
Atherosclerosis. 2010 Apr;209(2):321-35.
Comparison of approaches for efficient gene silencing induced by microRNA-based short hairpin RNA and indicator gene expression.
Shan ZX, Lin QX, Deng CY, Zhou ZL, Tan HH, Fu YH, Li XH, Zhu JN, Mai LP, Kuang SJ, Lin SG, Yu XY.
Mol Biol Rep. 2010 Apr;37(4):1831-9.
Toward a system-level understanding of microRNA pathway via mathematical modeling.
Wang X, Li Y, Xu X, Wang YH.
Biosystems. 2010 Apr;100(1):31-8.
mRNA and microRNA quality control for RT-qPCR analysis.
Becker C, Hammerle-Fickinger A, Riedmaier I, Pfaffl MW.
Methods. 2010 Apr;50(4):237-43.
Expression profiling of microRNA using real-time quantitative PCR, how to use it and what is available.
Benes V, Castoldi M.
Methods. 2010 Apr;50(4):244-9.
Analysis of circulating microRNA biomarkers in plasma and serum using quantitative reverse transcription-PCR (qRT-PCR).
Kroh EM, Parkin RK, Mitchell PS, Tewari M.
Methods. 2010 Apr;50(4):298-301.
Expanding applications of protein analysis using proximity ligation and qPCR.
Swartzman E, Shannon M, Lieu P, Chen SM, Mooney C, Wei E, Kuykendall J, Tan R, Settineri T, Egry L, Ruff D.
Methods. 2010 Apr;50(4):S23-6.
Improved microRNA quantification in total RNA from clinical samples.
Andreasen D, Fog JU, Biggs W, Salomon J, Dahslveen IK, Baker A, Mouritzen P.
Methods. 2010 Apr;50(4):S6-9.
The ongoing evolution of qPCR.
Pfaffl MW.
Methods. 2010 Apr;50(4):215-6.
A sensitive non-radioactive northern blot method to detect small RNAs.
Kim SW, Li Z, Moore PS, Monaghan AP, Chang Y, Nichols M, John B.
Nucleic Acids Res. 2010 Apr;38(7):e98.
Improvement of tissue preparation for laser capture microdissection: application for cell type-specific miRNA expression profiling in
colorectal tumors.
Wang S, Wang L, Zhu T, Gao X, Li J, Wu Y, Zhu H.
BMC Genomics. 2010 Mar 10;11:163.
Chimeric tRNAs as tools to induce proteome damage and identify components of stress responses.
Geslain R, Cubells L, Bori-Sanz T, Alvarez-Medina R, Rossell D, Martí E, de Pouplana LR.
Nucleic Acids Res. 2010 Mar 1;38(5):e30.
Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs.
Pradervand S, Weber J, Lemoine F, Consales F, Paillusson A, Dupasquier M, Thomas J, Richter H, Kaessmann H, Beaudoing E,
Hagenbüchle O, Harshman K.
Biotechniques. 2010 Mar;48(3):219-22.
The DIANA-mirExTra web server: from gene expression data to microRNA function.
Alexiou P, Maragkakis M, Papadopoulos GL, Simmosis VA, Zhang L, Hatzigeorgiou AG.
PLoS One. 2010 Feb 11;5(2):e9171.
Identifying co-regulating microRNA groups.
An J, Choi KP, Wells CA, Chen YP.
J Bioinform Comput Biol. 2010 Feb;8(1):99-115.
Computational approaches for microRNA studies: a review.
Li L, Xu J, Yang D, Tan X, Wang H.
Mamm Genome. 2010 Feb;21(1-2):1-12.
mRNA and micro-RNA expression analysis in laser-capture microdissected prostate biopsies: valuable tool for risk assessment and
prevention trials.
Nonn L, Vaishnav A, Gallagher L, Gann PH.
Exp Mol Pathol. 2010 Feb;88(1):45-51.
Ultrahighly sensitive homogeneous detection of DNA and microRNA by using single-silver-nanoparticle counting.
Xu F, Dong C, Xie C, Ren J.
Chemistry. 2010 Jan 18;16(3):1010-6.
A personalized microRNA microarray normalization method using a logistic regression model.
Wang B, Wang XF, Howell P, Qian X, Huang K, Riker AI, Ju J, Xi Y.
Bioinformatics. 2010 Jan 15;26(2):228-34.
Metal cation mediated-capillary electrophoresis of nucleic acids.
Li T, Zhang D, Luo W, Lu M, Wang Z, Song Y, Wang H.
Anal Chem. 2010 Jan 15;82(2):487-90.
miRMaid: a unified programming interface for microRNA data resources.
Jacobsen A, Krogh A, Kauppinen S, Lindow M.
BMC Bioinformatics. 2010 Jan 14;11:29.
Antisense gets a grip on miR-122 in chimpanzees.
Branch AD, Rice CM.
Sci Transl Med. 2010 Jan 6;2(13):13ps1.
Polymerase-endonuclease amplification reaction (PEAR) for large-scale enzymatic production of antisense oligonucleotides.
Wang X, Gou D, Xu SY.
PLoS One. 2010 Jan 1;5(1):e8430.
MicroRazerS: rapid alignment of small RNA reads.
Emde AK, Grunert M, Weese D, Reinert K, Sperling SR.
Bioinformatics. 2010 Jan 1;26(1):123-4.
Gene expression profiling of MicroRNAs in small-bowel transplantation paraffin-embedded mucosal biopsy tissue.
Sotolongo B, Asaoka T, Island E, Carreno M, Delacruz V, Cova D, Russo C, Tryphonopoulos P, Moon J, Weppler D, Tzakis A, Ruiz P.
Transplant Proc. 2010 Jan-Feb;42(1):62-5.
Delivery of RNA interference triggers to sensory neurons in vivo using herpes simplex virus.
Anesti AM, Coffin RS.
Expert Opin Biol Ther. 2010 Jan;10(1):89-103.
Exosomes from human saliva as a source of microRNA biomarkers.
Michael A, Bajracharya SD, Yuen PS, Zhou H, Star RA, Illei GG, Alevizos I.
Oral Dis. 2010 Jan;16(1):34-8.
A combined immunoprecipitation, mass spectrometric and nucleic acid sequencing approach to determine microRNA-mediated post-
transcriptional gene regulatory networks.
Savas JN, Tanese N.
Brief Funct Genomic Proteomic. 2010 Jan;9(1):24-31.
[Advances in approaches for the quantitative detection of microRNAs]
Jing H, Song QX, Zhou GH.
Yi Chuan. 2010 Jan;32(1):31-40.
Validation of extraction methods for total RNA and miRNA from bovine blood prior to quantitative gene expression analyses.
Hammerle-Fickinger A, Riedmaier I, Becker C, Meyer HH, Pfaffl MW, Ulbrich SE.
Biotechnol Lett. 2010 Jan;32(1):35-44.
Consensus miRNA expression profiles derived from interplatform normalization of microarray data.
Bargaje R, Hariharan M, Scaria V, Pillai B.
RNA. 2010 Jan;16(1):16-25.
Recognizing and avoiding siRNA off-target effects for target identification and therapeutic application.
Jackson AL, Linsley PS.
Nat Rev Drug Discov. 2010 Jan;9(1):57-67.
Detecting microarray data supported microRNA-mRNA interactions.
Liu H, Zhou S, Guan J.
Int J Data Min Bioinform. 2010;4(6):639-55.
A rapid, quantitative assay for direct detection of microRNAs and other small RNAs using splinted ligation.
Chamnongpol S, Maroney PA, Nilsen TW.
Methods Mol Biol. 2010;667:3-17.
Normalization of microRNA quantitative RT-PCR data in reduced scale experimental designs.
Latham GJ.
Methods Mol Biol. 2010;667:19-31.
Measuring microRNA expression in size-limited FACS-sorted and microdissected samples.
Hoefig KP, Heissmeyer V.
Methods Mol Biol. 2010;667:47-63.
Construction of small RNA cDNA libraries for deep sequencing.
Thomas MF, Ansel KM.
Methods Mol Biol. 2010;667:93-111.
MicroRNA-profiling in formalin-fixed paraffin-embedded specimens.
Lehmann U.
Methods Mol Biol. 2010;667:113-25.
Mouse models for miRNA expression: the ROSA26 locus.
Casola S.
Methods Mol Biol. 2010;667:145-63.
Stable overexpression of miRNAs in bone marrow-derived murine mast cells using lentiviral expression vectors.
Mayoral RJ, Monticelli S.
Methods Mol Biol. 2010;667:205-14.
Monitoring microRNA activity and validating microRNA targets by reporter-based approaches.
Baccarini A, Brown BD.
Methods Mol Biol. 2010;667:215-33.
Lentivirus-mediated antagomir expression.
Surdziel E, Eder M, Scherr M.
Methods Mol Biol. 2010;667:237-48.
Detection of small non-coding RNAs.
Dalmay T.
Methods Mol Biol. 2010;655:265-74.
LNA-FISH for detection of microRNAs in frozen sections.
Silahtaroglu AN.
Methods Mol Biol. 2010;659:165-71.
Lentiviral vectors to study the differential function of ERK1 and ERK2 MAP kinases.
Indrigo M, Papale A, Orellana D, Brambilla R.
Methods Mol Biol. 2010;661:205-20.
Advances in microarray data analysis and beyond.
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