Mechanism
Nucleolin protein interacts with microprocessor complex to affect biogenesis of microRNAs 15a and 16.
Pickering BF, Yu D, Van Dyke MW.
J Biol Chem. 2011 Dec 23;286(51):44095-103.
ceRNAs: miRNA target mimic mimics.
Rubio-Somoza I, Weigel D, Franco-Zorilla JM, García JA, Paz-Ares J.
Cell. 2011 Dec 23;147(7):1431-2.
Structural basis of pre-let-7 miRNA recognition by the zinc knuckles of pluripotency factor Lin28.
Loughlin FE, Gebert LF, Towbin H, Brunschweiger A, Hall J, Allain FH.
Nat Struct Mol Biol. 2011 Dec 11;19(1):84-9.
Regulation of miR-200c by nuclear receptors PPARα, LRH-1 and SHP.
Zhang Y, Yang Z, Whitby R, Wang L.
Biochem Biophys Res Commun. 2011 Dec 9;416(1-2):135-9.
Mutagens interfere with microRNA maturation by inhibiting DICER. An in silico biology analysis.
Ligorio M, Izzotti A, Pulliero A, Arrigo P.
Mutat Res. 2011 Dec 1;717(1-2):116-28.
PABP is not essential for microRNA-mediated translational repression and deadenylation in vitro.
Fukaya T, Tomari Y.
EMBO J. 2011 Nov 25;30(24):4998-5009.
Molecular basis for interaction of let-7 microRNAs with Lin28.
Nam Y, Chen C, Gregory RI, Chou JJ, Sliz P.
Cell. 2011 Nov 23;147(5):1080-91.
Lin28A and Lin28B inhibit let-7 microRNA biogenesis by distinct mechanisms.
Piskounova E, Polytarchou C, Thornton JE, LaPierre RJ, Pothoulakis C, Hagan JP, Iliopoulos D, Gregory RI.
Cell. 2011 Nov 23;147(5):1066-79.
Chromatin-associated RNA interference components contribute to transcriptional regulation in Drosophila.
Cernilogar FM, Onorati MC, Kothe GO, Burroughs AM, Parsi KM, Breiling A, Lo Sardo F, Saxena A, Miyoshi K, Siomi H, Siomi MC,
Carninci P, Gilmour DS, Corona DF, Orlando V.
Nature. 2011 Nov 6;480(7377):391-5.
Endogenous RNA cleavages at the ribosomal SRL site likely reflect miRNA (miR) mediated translational suppression.
Pichinuk E, Broday L, Wreschner DH.
Biochem Biophys Res Commun. 2011 Nov 4;414(4):706-11.
New insights in the mechanism of microRNA-mediated target repression.
Hafner M, Ascano M Jr, Tuschl T.
Nat Struct Mol Biol. 2011 Nov 4;18(11):1181-2.
MCPIP1 ribonuclease antagonizes dicer and terminates microRNA biogenesis through precursor microRNA degradation.
Suzuki HI, Arase M, Matsuyama H, Choi YL, Ueno T, Mano H, Sugimoto K, Miyazono K.
Mol Cell. 2011 Nov 4;44(3):424-36.
A novel nuclear miRNA mediated modulation of a non-coding antisense RNA and its cognate sense coding mRNA.
Rossi JJ.
EMBO J. 2011 Nov 2;30(21):4340-1.
Many routes to a micro RNA.
Yeo JH, Chong MM.
IUBMB Life. 2011 Nov;63(11):972-8.
From snoRNA to miRNA: Dual function regulatory non-coding RNAs.
Scott MS, Ono M.
Biochimie. 2011 Nov;93(11):1987-92.
Mirtrons: microRNA biogenesis via splicing.
Westholm JO, Lai EC.
Biochimie. 2011 Nov;93(11):1897-904.
The miRNA pathway limits AGO1 availability during siRNA-mediated PTGS defense against exogenous RNA.
Martínez de Alba AE, Jauvion V, Mallory AC, Bouteiller N, Vaucheret H.
Nucleic Acids Res. 2011 Nov;39(21):9339-44.
Functional evidence of post-transcriptional regulation by pseudogenes.
Muro EM, Mah N, Andrade-Navarro MA.
Biochimie. 2011 Nov;93(11):1916-21.
Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data.
Chien CH, Sun YM, Chang WC, Chiang-Hsieh PY, Lee TY, Tsai WC, Horng JT, Tsou AP, Huang HD.
Nucleic Acids Res. 2011 Nov;39(21):9345-56.
Small RNAs derived from longer non-coding RNAs.
Röther S, Meister G.
Biochimie. 2011 Nov;93(11):1905-15.
A Drosophila genetic screen yields allelic series of core microRNA biogenesis factors and reveals post-developmental roles for
microRNAs.
Smibert P, Bejarano F, Wang D, Garaulet DL, Yang JS, Martin R, Bortolamiol-Becet D, Robine N, Hiesinger PR, Lai EC.
RNA. 2011 Nov;17(11):1997-2010.
MicroRNA-binding is required for recruitment of human Argonaute 2 to stress granules and P-bodies.
Pare JM, López-Orozco J, Hobman TC.
Biochem Biophys Res Commun. 2011 Oct 14;414(1):259-64.
miRNA repression involves GW182-mediated recruitment of CCR4-NOT through conserved W-containing motifs.
Chekulaeva M, Mathys H, Zipprich JT, Attig J, Colic M, Parker R, Filipowicz W.
Nat Struct Mol Biol. 2011 Oct 7;18(11):1218-26.
miRNA-mediated deadenylation is orchestrated by GW182 through two conserved motifs that interact with CCR4-NOT.
Fabian MR, Cieplak MK, Frank F, Morita M, Green J, Srikumar T, Nagar B, Yamamoto T, Raught B, Duchaine TF, Sonenberg N.
Nat Struct Mol Biol. 2011 Oct 7;18(11):1211-7.
GW182 proteins directly recruit cytoplasmic deadenylase complexes to miRNA targets.
Braun JE, Huntzinger E, Fauser M, Izaurralde E.
Mol Cell. 2011 Oct 7;44(1):120-33.
Feed-forward microprocessing and splicing activities at a microRNA-containing intron.
Janas MM, Khaled M, Schubert S, Bernstein JG, Golan D, Veguilla RA, Fisher DE, Shomron N, Levy C, Novina CD.
PLoS Genet. 2011 Oct;7(10):e1002330.
RNA in pieces.
Tuck AC, Tollervey D.
Trends Genet. 2011 Oct;27(10):422-32.
Stochastic analysis of a miRNA-protein toggle switch.
Giampieri E, Remondini D, de Oliveira L, Castellani G, Lió P.
Mol Biosyst. 2011 Oct;7(10):2796-803.
Intercellular nanovesicle-mediated microRNA transfer: a mechanism of environmental modulation of hepatocellular cancer cell growth.
Kogure T, Lin WL, Yan IK, Braconi C, Patel T.
Hepatology. 2011 Oct;54(4):1237-48.
Specific sequence determinants of miR-15/107 microRNA gene group targets.
Nelson PT, Wang WX, Mao G, Wilfred BR, Xie K, Jennings MH, Gao Z, Wang X.
Nucleic Acids Res. 2011 Oct;39(18):8163-72.
Deep sequencing of microRNA precursors reveals extensive 3' end modification.
Newman MA, Mani V, Hammond SM.
RNA. 2011 Oct;17(10):1795-803.
miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA.
Hansen TB, Wiklund ED, Bramsen JB, Villadsen SB, Statham AL, Clark SJ, Kjems J.
EMBO J. 2011 Sep 30;30(21):4414-22.
Mitochondria as novel players of the cellular RNA interference.
Bandiera S, Hanein S, Lyonnet S, Henrion-Caude A.
J Biol Chem. 2011 Sep 23;286(38):le19.
Expression levels of microRNAs are not associated with their regulatory activities.
Liang Z, Zhou H, Zheng H, Wu J.
Biol Direct. 2011 Sep 19;6:43.
Recognition of the pre-miRNA structure by Drosophila Dicer-1.
Tsutsumi A, Kawamata T, Izumi N, Seitz H, Tomari Y.
Nat Struct Mol Biol. 2011 Sep 18;18(10):1153-8.
Mechanisms and consequences of alternative polyadenylation.
Di Giammartino DC, Nishida K, Manley JL.
Mol Cell. 2011 Sep 16;43(6):853-66.
Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants.
Yang JS, Lai EC.
Mol Cell. 2011 Sep 16;43(6):892-903.
MicroRNA destabilization enables dynamic regulation of the miR-16 family in response to cell-cycle changes.
Rissland OS, Hong SJ, Bartel DP.
Mol Cell. 2011 Sep 16;43(6):993-1004.
Cell adhesion-dependent control of microRNA decay.
Kim YK, Yeo J, Ha M, Kim B, Kim VN.
Mol Cell. 2011 Sep 16;43(6):1005-14.
Uncovering new functions for microRNAs in Caenorhabditis elegans.
Abbott AL.
Curr Biol. 2011 Sep 13;21(17):R668-71.
Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs.
Garcia DM, Baek D, Shin C, Bell GW, Grimson A, Bartel DP.
Nat Struct Mol Biol. 2011 Sep 11;18(10):1139-46.
A LIN28-dependent structural change in pre-let-7g directly inhibits dicer processing.
Lightfoot HL, Bugaut A, Armisen J, Lehrbach NJ, Miska EA, Balasubramanian S.
Biochemistry. 2011 Sep 6;50(35):7514-21.
Ago2/miRISC-mediated inhibition of CBP80/20-dependent translation and thereby abrogation of nonsense-mediated mRNA decay
require the cap-associating activity of Ago2.
Choe J, Cho H, Chi SG, Kim YK.
FEBS Lett. 2011 Sep 2;585(17):2682-7.
Multilayer checkpoints for microRNA authenticity during RISC assembly.
Kawamata T, Yoda M, Tomari Y.
EMBO Rep. 2011 Sep 1;12(9):944-9.
Cis-regulation of microRNA expression by scaffold/matrix-attachment regions.
Chavali PL, Funa K, Chavali S.
Nucleic Acids Res. 2011 Sep 1;39(16):6908-18.
Characterization of extracellular circulating microRNA.
Turchinovich A, Weiz L, Langheinz A, Burwinkel B.
Nucleic Acids Res. 2011 Sep 1;39(16):7223-33.
Visualization of single mRNAs reveals temporal association of proteins with microRNA-regulated mRNA.
Shih JD, Waks Z, Kedersha N, Silver PA.
Nucleic Acids Res. 2011 Sep 1;39(17):7740-9.
The regulatory epicenter of miRNAs.
Jha A, Mehra M, Shankar R.
J Biosci. 2011 Sep;36(4):621-38.
Unusually effective microRNA targeting within repeat-rich coding regions of mammalian mRNAs.
Schnall-Levin M, Rissland OS, Johnston WK, Perrimon N, Bartel DP, Berger B.
Genome Res. 2011 Sep;21(9):1395-403.
MicroRNA-offset RNAs (moRNAs): by-product spectators or functional players?
Bortoluzzi S, Biasiolo M, Bisognin A.
Trends Mol Med. 2011 Sep;17(9):473-4.
Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity.
Wyman SK, Knouf EC, Parkin RK, Fritz BR, Lin DW, Dennis LM, Krouse MA, Webster PJ, Tewari M.
Genome Res. 2011 Sep;21(9):1450-61.
Genomic imprinting in mammals-epigenetic parental memories.
Kaneda M.
Differentiation. 2011 Sep;82(2):51-6.
The role of the precursor structure in the biogenesis of microRNA.
Starega-Roslan J, Koscianska E, Kozlowski P, Krzyzosiak WJ.
Cell Mol Life Sci. 2011 Sep;68(17):2859-71.
Ran-dependent nuclear export mediators: a structural perspective.
Güttler T, Görlich D.
EMBO J. 2011 Aug 31;30(17):3457-74.
MicroRNAs coordinately regulate protein complexes.
Sass S, Dietmann S, Burk UC, Brabletz S, Lutter D, Kowarsch A, Mayer KF, Brabletz T, Ruepp A, Theis FJ, Wang Y.
BMC Syst Biol. 2011 Aug 25;5:136.
MicroRNAs can generate thresholds in target gene expression.
Mukherji S, Ebert MS, Zheng GX, Tsang JS, Sharp PA, van Oudenaarden A.
Nat Genet. 2011 Aug 21;43(9):854-9.
Understanding the transcriptome through RNA structure.
Wan Y, Kertesz M, Spitale RC, Segal E, Chang HY.
Nat Rev Genet. 2011 Aug 18;12(9):641-55.
Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes.
Valen E, Preker P, Andersen PR, Zhao X, Chen Y, Ender C, Dueck A, Meister G, Sandelin A, Jensen TH.
Nat Struct Mol Biol. 2011 Aug 7;18(9):1075-82.
Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability.
Mukherjee N, Corcoran DL, Nusbaum JD, Reid DW, Georgiev S, Hafner M, Ascano M Jr, Tuschl T, Ohler U, Keene JD.
Mol Cell. 2011 Aug 5;43(3):327-39.
Synthetic incoherent feedforward circuits show adaptation to the amount of their genetic template.
Bleris L, Xie Z, Glass D, Adadey A, Sontag E, Benenson Y.
Mol Syst Biol. 2011 Aug 2;7:519.
'Inc-miRs': functional intron-interrupted miRNA genes.
Zhang H, Maniar JM, Fire AZ.
Genes Dev. 2011 Aug 1;25(15):1589-94.
Control of microRNA biogenesis and transcription by cell signaling pathways.
Saj A, Lai EC.
Curr Opin Genet Dev. 2011 Aug;21(4):504-10.
Transcriptional regulation by miRNA mimics that target sequences downstream of gene termini.
Younger ST, Corey DR.
Mol Biosyst. 2011 Aug;7(8):2383-8.
Identification of the transcriptional promoters in the proximal regions of human microRNA genes.
Long YS, Deng GF, Sun XS, Yi YH, Su T, Zhao QH, Liao WP.
Mol Biol Rep. 2011 Aug;38(6):4153-7.
Dynamic mechanisms for pre-miRNA binding and export by Exportin-5.
Wang X, Xu X, Ma Z, Huo Y, Xiao Z, Li Y, Wang Y.
RNA. 2011 Aug;17(8):1511-28.
Systemic comparison of repression activity for miRNA and siRNA associated with different types of target sequences.
Lee HC, Chen CY, Au LC.
Biochem Biophys Res Commun. 2011 Jul 29;411(2):393-6.
Evidence for post-transcriptional regulation of clustered microRNAs in Drosophila.
Ryazansky SS, Gvozdev VA, Berezikov E.
BMC Genomics. 2011 Jul 19;12:371.
Dicer recognizes the 5' end of RNA for efficient and accurate processing.
Park JE, Heo I, Tian Y, Simanshu DK, Chang H, Jee D, Patel DJ, Kim VN.
Nature. 2011 Jul 13;475(7355):201-5.
Mammalian hyperplastic discs homolog EDD regulates miRNA-mediated gene silencing.
Su H, Meng S, Lu Y, Trombly MI, Chen J, Lin C, Turk A, Wang X.
Mol Cell. 2011 Jul 8;43(1):97-109.
Mitochondria associate with P-bodies and modulate microRNA-mediated RNA interference.
Huang L, Mollet S, Souquere S, Le Roy F, Ernoult-Lange M, Pierron G, Dautry F, Weil D.
J Biol Chem. 2011 Jul 8;286(27):24219-30.
A detailed investigation of accessibilities around target sites of siRNAs and miRNAs.
Kiryu H, Terai G, Imamura O, Yoneyama H, Suzuki K, Asai K.
Bioinformatics. 2011 Jul 1;27(13):1788-97.
Single-molecule approach to immunoprecipitated protein complexes: insights into miRNA uridylation.
Yeom KH, Heo I, Lee J, Hohng S, Kim VN, Joo C.
EMBO Rep. 2011 Jul 1;12(7):690-6.
The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences.
Seemann SE, Menzel P, Backofen R, Gorodkin J.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W107-11.
The type II poly(A)-binding protein PABP-2 genetically interacts with the let-7 miRNA and elicits heterochronic phenotypes in
Caenorhabditis elegans.
Hurschler BA, Harris DT, Grosshans H.
Nucleic Acids Res. 2011 Jul;39(13):5647-57.
Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters.
Younger ST, Corey DR.
Nucleic Acids Res. 2011 Jul;39(13):5682-91.
Global analysis of the mammalian RNA degradome reveals widespread miRNA-dependent and miRNA-independent endonucleolytic
cleavage.
Bracken CP, Szubert JM, Mercer TR, Dinger ME, Thomson DW, Mattick JS, Michael MZ, Goodall GJ.
Nucleic Acids Res. 2011 Jul;39(13):5658-68.
Analysis of microRNA turnover in mammalian cells following Dicer1 ablation.
Gantier MP, McCoy CE, Rusinova I, Saulep D, Wang D, Xu D, Irving AT, Behlke MA, Hertzog PJ, Mackay F, Williams BR.
Nucleic Acids Res. 2011 Jul;39(13):5692-703.
Activation of a microRNA response in trans reveals a new role for poly(A) in translational repression.
Ricci EP, Limousin T, Soto-Rifo R, Allison R, Pöyry T, Decimo D, Jackson RJ, Ohlmann T.
Nucleic Acids Res. 2011 Jul;39(12):5215-31.
Chromatin structure characteristics of pre-miRNA genomic sequences.
Zhu S, Jiang Q, Wang G, Liu B, Teng M, Wang Y.
BMC Genomics. 2011 Jun 25;12:329.
MicroRNA regulation constrains the organization of target genes on mammalian chromosomes.
Wang ZZ, Gong BS, Wang HK, Wang HJ, Zhou M, Wang QH, Chen X, Liu T, Li X.
FEBS Lett. 2011 Jun 23;585(12):1897-904.
The ribosomal protein RACK1 is required for microRNA function in both C. elegans and humans.
Jannot G, Bajan S, Giguère NJ, Bouasker S, Banville IH, Piquet S, Hutvagner G, Simard MJ.
EMBO Rep. 2011 Jun;12(6):581-6.
Participation of microRNAs in human interactome: extraction of microRNA-microRNA regulations.
Sengupta D, Bandyopadhyay S.
Mol Biosyst. 2011 Jun;7(6):1966-73.
A KLF4-miRNA-206 autoregulatory feedback loop can promote or inhibit protein translation depending upon cell context.
Lin CC, Liu LZ, Addison JB, Wonderlin WF, Ivanov AV, Ruppert JM.
Mol Cell Biol. 2011 Jun;31(12):2513-27.
The conformation of microRNA seed regions in native microRNPs is prearranged for presentation to mRNA targets.
Lambert NJ, Gu SG, Zahler AM.
Nucleic Acids Res. 2011 Jun;39(11):4827-35.
mRNA isoform diversity can obscure detection of miRNA-mediated control of translation.
Clancy JL, Wei GH, Echner N, Humphreys DT, Beilharz TH, Preiss T.
RNA. 2011 Jun;17(6):1025-31.
Poly(ADP-ribose) regulates stress responses and microRNA activity in the cytoplasm.
Leung AK, Vyas S, Rood JE, Bhutkar A, Sharp PA, Chang P.
Mol Cell. 2011 May 20;42(4):489-99.
Identification of a microRNA that activates gene expression by repressing nonsense-mediated RNA decay.
Bruno IG, Karam R, Huang L, Bhardwaj A, Lou CH, Shum EY, Song HW, Corbett MA, Gifford WD, Gecz J, Pfaff SL, Wilkinson MF.
Mol Cell. 2011 May 20;42(4):500-10.
Posttranscriptional activation of gene expression in Xenopus laevis oocytes by microRNA-protein complexes (microRNPs).
Mortensen RD, Serra M, Steitz JA, Vasudevan S.
Proc Natl Acad Sci U S A. 2011 May 17;108(20):8281-6.
Exosomes as intercellular signalosomes and pharmacological effectors.
Record M, Subra C, Silvente-Poirot S, Poirot M.
Biochem Pharmacol. 2011 May 15;81(10):1171-82.
Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes.
Zhang Z, Zhang MQ.
BMC Bioinformatics. 2011 May 14;12:155.
DiGeorge critical region 8 (DGCR8) is a double-cysteine-ligated heme protein.
Barr I, Smith AT, Senturia R, Chen Y, Scheidemantle BD, Burstyn JN, Guo F.
J Biol Chem. 2011 May 13;286(19):16716-25.
Evolution of MIR159/319 microRNA genes and their post-transcriptional regulatory link to siRNA pathways.
Li Y, Li C, Ding G, Jin Y.
BMC Evol Biol. 2011 May 12;11(1):122.
Versatility of MicroRNA biogenesis.
Volk N, Shomron N.
PLoS One. 2011 May 10;6(5):e19391.
CPEB and two poly(A) polymerases control miR-122 stability and p53 mRNA translation.
Burns DM, D'Ambrogio A, Nottrott S, Richter JD.
Nature. 2011 May 5;473(7345):105-8.
[Structural and thermodynamic features of intergenic and intronic human primary microRNAs].
Posrednik DV, Romanovskaia TV, Radishchevskaia AA, Khatskevich AA, Goncharevich AIu, Cherepovich VS, Grinev VV.
Mol Biol (Mosk). 2011 May-Jun;45(3):554-64.
Toward a systematic understanding of mRNA 3' untranslated regions.
Zhao W, Blagev D, Pollack JL, Erle DJ.
Proc Am Thorac Soc. 2011 May;8(2):163-6.
The full-length transcripts and promoter analysis of intergenic microRNAs in Drosophila melanogaster.
Qian J, Zhang Z, Liang J, Ge Q, Duan X, Ma F, Li F.
Genomics. 2011 May;97(5):294-303.
Uracils at nucleotide position 9-11 are required for the rapid turnover of miR-29 family.
Zhang Z, Zou J, Wang GK, Zhang JT, Huang S, Qin YW, Jing Q.
Nucleic Acids Res. 2011 May;39(10):4387-95.
Identification of human miRNA precursors that resemble box C/D snoRNAs.
Ono M, Scott MS, Yamada K, Avolio F, Barton GJ, Lamond AI.
Nucleic Acids Res. 2011 May;39(9):3879-91.
Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis.
Lee BK, Bhinge AA, Iyer VR.
Nucleic Acids Res. 2011 May;39(9):3558-73.
MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action.
Wen J, Parker BJ, Jacobsen A, Krogh A.
RNA. 2011 May;17(5):820-34.
Clarifying mammalian RISC assembly in vitro.
Tan GS, Garchow BG, Liu X, Metzler D, Kiriakidou M.
BMC Mol Biol. 2011 Apr 29;12:19.
Phosphate and R2D2 restrict the substrate specificity of Dicer-2, an ATP-driven ribonuclease.
Cenik ES, Fukunaga R, Lu G, Dutcher R, Wang Y, Tanaka Hall TM, Zamore PD.
Mol Cell. 2011 Apr 22;42(2):172-84.
Analyzing modular RNA structure reveals low global structural entropy in microRNA sequence.
Shaw TI, Manzour A, Wang Y, Malmberg RL, Cai L.
J Bioinform Comput Biol. 2011 Apr;9(2):283-98.
When one is better than two: RNA with dual functions.
Ulveling D, Francastel C, Hubé F.
Biochimie. 2011 Apr;93(4):633-44.
Divergent GW182 functional domains in the regulation of translational silencing.
Yao B, Li S, Jung HM, Lian SL, Abadal GX, Han F, Fritzler MJ, Chan EK.
Nucleic Acids Res. 2011 Apr;39(7):2534-47.
Traces of post-transcriptional RNA modifications in deep sequencing data.
Findeiss S, Langenberger D, Stadler PF, Hoffmann S.
Biol Chem. 2011 Apr;392(4):305-13.
MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins.
Vickers KC, Palmisano BT, Shoucri BM, Shamburek RD, Remaley AT.
Nat Cell Biol. 2011 Apr;13(4):423-33.
Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer.
Warf MB, Johnson WE, Bass BL.
RNA. 2011 Apr;17(4):563-77.
Viral microRNA target allows insight into the role of translation in governing microRNA target accessibility.
Lin HR, Ganem D.
Proc Natl Acad Sci U S A. 2011 Mar 29;108(13):5148-53.
The impact of miRNA target sites in coding sequences and in 3'UTRs.
Fang Z, Rajewsky N.
PLoS One. 2011 Mar 22;6(3):e18067.
Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma.
Arroyo JD, Chevillet JR, Kroh EM, Ruf IK, Pritchard CC, Gibson DF, Mitchell PS, Bennett CF, Pogosova-Agadjanyan EL, Stirewalt DL, Tait
JF, Tewari M.
Proc Natl Acad Sci U S A. 2011 Mar 22;108(12):5003-8.
Target-mediated protection of endogenous microRNAs in C. elegans.
Chatterjee S, Fasler M, Büssing I, Grosshans H.
Dev Cell. 2011 Mar 15;20(3):388-96.
Kinetic analysis reveals the fate of a microRNA following target regulation in mammalian cells.
Baccarini A, Chauhan H, Gardner TJ, Jayaprakash AD, Sachidanandam R, Brown BD.
Curr Biol. 2011 Mar 8;21(5):369-76.
Dicer's helicase domain discriminates dsRNA termini to promote an altered reaction mode.
Welker NC, Maity TS, Ye X, Aruscavage PJ, Krauchuk AA, Liu Q, Bass BL.
Mol Cell. 2011 Mar 4;41(5):589-99.
Paradoxical microRNAs: individual gene repressors, global translation enhancers.
Srikantan S, Marasa BS, Becker KG, Gorospe M, Abdelmohsen K.
Cell Cycle. 2011 Mar 1;10(5):751-9.
[The nucleotide sequence features of the mature microRNA seem to be responsible for the affinity to human Ago2 AND Ago3 proteins].
Omel'ianchuk NA, Ponomarenko PM, Ponomarenko MP.
Mol Biol (Mosk). 2011 Mar-Apr;45(2):366-75.
The role of incoherent microRNA-mediated feedforward loops in noise buffering.
Osella M, Bosia C, Corá D, Caselle M.
PLoS Comput Biol. 2011 Mar;7(3):e1001101.
Ultraconserved cDNA segments in the human transcriptome exhibit resistance to folding and implicate function in translation and
alternative splicing.
Sathirapongsasuti JF, Sathira N, Suzuki Y, Huttenhower C, Sugano S.
Nucleic Acids Res. 2011 Mar;39(6):1967-79.
Critical association of ncRNA with introns.
Rearick D, Prakash A, McSweeny A, Shepard SS, Fedorova L, Fedorov A.
Nucleic Acids Res. 2011 Mar;39(6):2357-66.
Polypyrimidine tract-binding protein 2 binds to selective, intronic messenger RNA and microRNA targets in the mouse testis.
Xu M, Hecht NB.
Biol Reprod. 2011 Mar;84(3):435-9.
LIN-28 co-transcriptionally binds primary let-7 to regulate miRNA maturation in Caenorhabditis elegans.
Van Wynsberghe PM, Kai ZS, Massirer KB, Burton VH, Yeo GW, Pasquinelli AE.
Nat Struct Mol Biol. 2011 Mar;18(3):302-8.
Competition for XPO5 binding between Dicer mRNA, pre-miRNA and viral RNA regulates human Dicer levels.
Bennasser Y, Chable-Bessia C, Triboulet R, Gibbings D, Gwizdek C, Dargemont C, Kremer EJ, Voinnet O, Benkirane M.
Nat Struct Mol Biol. 2011 Mar;18(3):323-7.
Differential utilization of decapping enzymes in mammalian mRNA decay pathways.
Li Y, Song M, Kiledjian M.
RNA. 2011 Mar;17(3):419-28.
Expression of micro-RNA-145 is regulated by a highly conserved genomic sequence 3' to the pre-miR.
La Rocca G, Shi B, Sepp-Lorenzino L, Baserga R.
J Cell Physiol. 2011 Mar;226(3):602-7.
Coregulation of transcription factors and microRNAs in human transcriptional regulatory network.
Chen CY, Chen ST, Fuh CS, Juan HF, Huang HC.
BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S41.
Regulation of microRNA-145 by growth arrest and differentiation.
La Rocca G, Shi B, Audia A, Ferrari-Amorotti G, Mellert HS, Calabretta B, McMahon SB, Sepp-Lorenzino L, Baserga R.
Exp Cell Res. 2011 Feb 15;317(4):488-95.
Slowly produced microRNAs control protein levels.
Whichard ZL, Motter AE, Stein PJ, Corey SJ.
J Biol Chem. 2011 Feb 11;286(6):4742-8.
Two-step cleavage of hairpin RNA with 5' overhangs by human DICER.
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BMC Mol Biol. 2011 Feb 9;12:6.
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