Mechanism
Dynamic origins of differential RNA binding function in two dsRBDs from the miRNA "microprocessor" complex.
Wostenberg C, Quarles KA, Showalter SA.
Biochemistry. 2010 Dec 21;49(50):10728-36.
Gene processing control loops suggested by sequencing, splicing, and RNA folding.
Jeffries CD, Perkins DO, Guan X.
BMC Bioinformatics. 2010 Dec 20;11:602.
Sampling the structure of the noncanonical lin-4:lin-14 microRNA:mRNA complex by molecular dynamics simulations.
Balasubramanian C, Ojha RP, Maiti S, Desideri A.
J Phys Chem B. 2010 Dec 16;114(49):16443-9.
Biaryl modification of the 5'-terminus of one strand of a microRNA duplex induces strand specificity.
Ogata A, Furukawa C, Sakurai K, Iba H, Kitade Y, Ueno Y.
Bioorg Med Chem Lett. 2010 Dec 15;20(24):7299-302.
Two PABPC1-binding sites in GW182 proteins promote miRNA-mediated gene silencing.
Huntzinger E, Braun JE, Heimstädt S, Zekri L, Izaurralde E.
EMBO J. 2010 Dec 15;29(24):4146-60.
Substrate-specific kinetics of Dicer-catalyzed RNA processing.
Chakravarthy S, Sternberg SH, Kellenberger CA, Doudna JA.
J Mol Biol. 2010 Dec 3;404(3):392-402.
Multidirectional interplay between nuclear receptors and microRNAs.
Pandey DP, Picard D.
Curr Opin Pharmacol. 2010 Dec;10(6):637-42.
Regulated and quality-control mRNA turnover pathways in eukaryotes.
Reznik B, Lykke-Andersen J.
Biochem Soc Trans. 2010 Dec;38(6):1506-10.
Cytoplasmic deadenylation: regulation of mRNA fate.
Wiederhold K, Passmore LA.
Biochem Soc Trans. 2010 Dec;38(6):1531-6.
Mechanism of translational regulation by miR-2 from sites in the 5' untranslated region or the open reading frame.
Moretti F, Thermann R, Hentze MW.
RNA. 2010 Dec;16(12):2493-502.
Persistence of seed-based activity following segmentation of a microRNA guide strand.
Chorn G, Zhao L, Sachs AB, Flanagan WM, Lim LP.
RNA. 2010 Dec;16(12):2336-40.
Short RNA duplexes guide sequence-dependent cleavage by human Dicer.
Bergeron L Jr, Perreault JP, Abou Elela S.
RNA. 2010 Dec;16(12):2464-73.
Pervasive and cooperative deadenylation of 3'UTRs by embryonic microRNA families.
Wu E, Thivierge C, Flamand M, Mathonnet G, Vashisht AA, Wohlschlegel J, Fabian MR, Sonenberg N, Duchaine TF.
Mol Cell. 2010 Nov 24;40(4):558-70.
Modifications of small RNAs and their associated proteins.
Kim YK, Heo I, Kim VN.
Cell. 2010 Nov 24;143(5):703-9.
The multiple roles of TDP-43 in pre-mRNA processing and gene expression regulation.
Buratti E, Baralle FE.
RNA Biol. 2010 Nov 19;7(4):420-9.
mRNA turnover rate limits siRNA and microRNA efficacy.
Larsson E, Sander C, Marks D.
Mol Syst Biol. 2010 Nov 16;6:433.
To polyadenylate or to deadenylate: that is the question.
Zhang X, Virtanen A, Kleiman FE.
Cell Cycle. 2010 Nov 15;9(22):4437-49.
Dicer-independent, Ago2-mediated microRNA biogenesis in vertebrates.
Yang JS, Lai EC.
Cell Cycle. 2010 Nov 15;9(22):4455-60.
Xenopus furry contributes to release of microRNA gene silencing.
Goto T, Fukui A, Shibuya H, Keller R, Asashima M.
Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19344-9.
Combinatorial regulation of transcription factors and microRNAs.
Su N, Wang Y, Qian M, Deng M.
BMC Syst Biol. 2010 Nov 8;4:150.
RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation.
Wang G, Wang Y, Shen C, Huang YW, Huang K, Huang TH, Nephew KP, Li L, Liu Y.
PLoS One. 2010 Nov 2;5(11):e13798.
The terminal loop region controls microRNA processing by Drosha and Dicer.
Zhang X, Zeng Y.
Nucleic Acids Res. 2010 Nov 1;38(21):7689-97.
NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans.
Cevec M, Thibaudeau C, Plavec J.
Nucleic Acids Res. 2010 Nov 1;38(21):7814-21.
CPEB2, CPEB3 and CPEB4 are coordinately regulated by miRNAs recognizing conserved binding sites in paralog positions of their
3'-UTRs.
Morgan M, Iaconcig A, Muro AF.
Nucleic Acids Res. 2010 Nov 1;38(21):7698-710.
MicroRNA-181a modulates gene expression of zinc finger family members by directly targeting their coding regions.
Huang S, Wu S, Ding J, Lin J, Wei L, Gu J, He X.
Nucleic Acids Res. 2010 Nov 1;38(20):7211-8.
Export of microRNAs and microRNA-protective protein by mammalian cells.
Wang K, Zhang S, Weber J, Baxter D, Galas DJ.
Nucleic Acids Res. 2010 Nov 1;38(20):7248-59.
siRNAs from miRNA sites mediate DNA methylation of target genes.
Chellappan P, Xia J, Zhou X, Gao S, Zhang X, Coutino G, Vazquez F, Zhang W, Jin H.
Nucleic Acids Res. 2010 Nov 1;38(20):6883-94.
A-to-I RNA editing: a contribution to diversity of the transcriptome and an organism's development.
Zamyatnin AA Jr, Lyamzaev KG, Zinovkin RA.
Biochemistry (Mosc). 2010 Nov;75(11):1316-23.
Dynamics of microRNA biogenesis: crosstalk between p53 network and microRNA processing pathway.
Suzuki HI, Miyazono K.
J Mol Med. 2010 Nov;88(11):1085-94.
Correlation between sequence conservation and structural thermodynamics of microRNA precursors from human, mouse, and chicken
genomes.
Ni M, Shu W, Bo X, Wang S, Li S.
BMC Evol Biol. 2010 Oct 27;10:329.
miRNA-mediated functional changes through co-regulating function related genes.
He J, Zhang JF, Yi C, Lv Q, Xie WD, Li JN, Wan G, Cui K, Kung HF, Yang J, Yang BB, Zhang Y.
PLoS One. 2010 Oct 22;5(10):e13558.
Emerging roles for natural microRNA sponges.
Ebert MS, Sharp PA.
Curr Biol. 2010 Oct 12;20(19):R858-61.
The potential functions of primary microRNAs in target recognition and repression.
Trujillo RD, Yue SB, Tang Y, O'Gorman WE, Chen CZ.
EMBO J. 2010 Oct 6;29(19):3272-85.
Systematic analysis of regulation and functions of co-expressed microRNAs in humans.
Liao M, Jiang W, Chen X, Lian B, Li W, Lv Y, Wang Y, Wang S, Li X.
Mol Biosyst. 2010 Oct 1;6(10):1863-72.
The GW/WG repeats of Drosophila GW182 function as effector motifs for miRNA-mediated repression.
Chekulaeva M, Parker R, Filipowicz W.
Nucleic Acids Res. 2010 Oct 1;38(19):6673-83.
Phosphorylation of the RNase III enzyme Drosha at Serine300 or Serine302 is required for its nuclear localization.
Tang X, Zhang Y, Tucker L, Ramratnam B.
Nucleic Acids Res. 2010 Oct 1;38(19):6610-9.
A potential role for intragenic miRNAs on their hosts' interactome.
Hinske LC, Galante PA, Kuo WP, Ohno-Machado L.
BMC Genomics. 2010 Oct 1;11:533.
Interplay between microRNAs and the epigenetic machinery: an intricate network.
Iorio MV, Piovan C, Croce CM.
Biochim Biophys Acta. 2010 Oct-Dec;1799(10-12):694-701.
Mechanisms of control of microRNA biogenesis.
Davis-Dusenbery BN, Hata A.
J Biochem. 2010 Oct;148(4):381-92.
[Comparative organization and the origin of noncoding regulatory RNA genes from X-chromosome inactivation center of human and
mouse].
Kolesnikov NN, Elisafenko EA.
Genetika. 2010 Oct;46(10):1386-91.
A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting
effectiveness.
Burroughs AM, Ando Y, de Hoon MJ, Tomaru Y, Nishibu T, Ukekawa R, Funakoshi T, Kurokawa T, Suzuki H, Hayashizaki Y, Daub CO.
Genome Res. 2010 Oct;20(10):1398-410.
Comprehensive analysis of simple sequence repeats in pre-miRNAs.
Chen M, Tan Z, Zeng G, Peng J.
Mol Biol Evol. 2010 Oct;27(10):2227-32.
Smoke and miRrors: pseudogenes tricking miRNAs.
Chen M.
Pigment Cell Melanoma Res. 2010 Oct;23(5):583-4.
A Pumilio-induced RNA structure switch in p27-3' UTR controls miR-221 and miR-222 accessibility.
Kedde M, van Kouwenhove M, Zwart W, Oude Vrielink JA, Elkon R, Agami R.
Nat Cell Biol. 2010 Oct;12(10):1014-20.
Pumilio turns on microRNA function.
Triboulet R, Gregory RI.
Nat Cell Biol. 2010 Oct;12(10):928-9.
Kinetic and functional analysis of the small RNA methyltransferase HEN1: the catalytic domain is essential for preferential modification of
duplex RNA.
Vilkaitis G, Plotnikova A, Klimasauskas S.
RNA. 2010 Oct;16(10):1935-42.
Regulatory RNAs derived from transfer RNA?
Pederson T.
RNA. 2010 Oct;16(10):1865-9.
Perturbation analysis of heterochromatin-mediated gene silencing and somatic inheritance.
Schneiderman JI, Goldstein S, Ahmad K.
PLoS Genet. 2010 Sep 9;6(9). pii: e1001095.
Canonical and alternate functions of the microRNA biogenesis machinery.
Chong MM, Zhang G, Cheloufi S, Neubert TA, Hannon GJ, Littman DR.
Genes Dev. 2010 Sep 1;24(17):1951-60.
Developmental RNA processing of 3'UTRs in Hox mRNAs as a context-dependent mechanism modulating visibility to microRNAs.
Thomsen S, Azzam G, Kaschula R, Williams LS, Alonso CR.
Development. 2010 Sep 1;137(17):2951-60.
A miRNA-tRNA mix-up: tRNA origin of proposed miRNA.
Schopman NC, Heynen S, Haasnoot J, Berkhout B.
RNA Biol. 2010 Sep-Oct;7(5):573-6.
Human with-no-lysine kinase-4 3'-UTR acting as the enhancer and being targeted by miR-296.
Mao J, Li C, Zhang Y, Li Y, Zhao Y.
Int J Biochem Cell Biol. 2010 Sep;42(9):1536-43.
The widespread regulation of microRNA biogenesis, function and decay.
Krol J, Loedige I, Filipowicz W.
Nat Rev Genet. 2010 Sep;11(9):597-610.
Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis.
Yang JS, Maurin T, Robine N, Rasmussen KD, Jeffrey KL, Chandwani R, Papapetrou EP, Sadelain M, O'Carroll D, Lai EC.
Proc Natl Acad Sci U S A. 2010 Aug 24;107(34):15163-8.
Smad proteins bind a conserved RNA sequence to promote microRNA maturation by Drosha.
Davis BN, Hilyard AC, Nguyen PH, Lagna G, Hata A.
Mol Cell. 2010 Aug 13;39(3):373-84.
Mammalian microRNAs predominantly act to decrease target mRNA levels.
Guo H, Ingolia NT, Weissman JS, Bartel DP.
Nature. 2010 Aug 12;466(7308):835-40.
miReg: a resource for microRNA regulation.
Barh D, Bhat D, Viero C.
J Integr Bioinform. 2010 Aug 6;7(1).
Dicing with death: Mitf regulates DICER.
Goding CR.
Pigment Cell Melanoma Res. 2010 Aug;23(4):483-4.
Signatures of RNA binding proteins globally coupled to effective microRNA target sites.
Jacobsen A, Wen J, Marks DS, Krogh A.
Genome Res. 2010 Aug;20(8):1010-9.
Exploring the ncRNA-ncRNA patterns based on bridging rules.
Chen F, Chen YP.
J Biomed Inform. 2010 Aug;43(4):569-77.
Additional layers of gene regulatory complexity from recently discovered microRNA mechanisms.
Jeffries CD, Fried HM, Perkins DO.
Int J Biochem Cell Biol. 2010 Aug;42(8):1236-42.
The complexities of microRNA regulation: mirandering around the rules.
Breving K, Esquela-Kerscher A.
Int J Biochem Cell Biol. 2010 Aug;42(8):1316-29.
Argonaute MID domain takes centre stage.
Faehnle CR, Joshua-Tor L.
EMBO Rep. 2010 Aug;11(8):564-5.
Numerical modelling of microRNA-mediated mRNA decay identifies novel mechanism of microRNA controlled mRNA downregulation.
Vohradsky J, Panek J, Vomastek T.
Nucleic Acids Res. 2010 Aug;38(14):4579-85.
Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans.
Taft RJ, Simons C, Nahkuri S, Oey H, Korbie DJ, Mercer TR, Holst J, Ritchie W, Wong JJ, Rasko JE, Rokhsar DS, Degnan BM, Mattick
JS.
Nat Struct Mol Biol. 2010 Aug;17(8):1030-4.
Control of RNA silencing and localization by endolysosomes.
Gibbings D, Voinnet O.
Trends Cell Biol. 2010 Aug;20(8):491-501.
Antagonistic role of hnRNP A1 and KSRP in the regulation of let-7a biogenesis.
Michlewski G, Cáceres JF.
Nat Struct Mol Biol. 2010 Aug;17(8):1011-8.
DGCR8 recognizes primary transcripts of microRNAs through highly cooperative binding and formation of higher-order structures.
Faller M, Toso D, Matsunaga M, Atanasov I, Senturia R, Chen Y, Zhou ZH, Guo F.
RNA. 2010 Aug;16(8):1570-83.
Many ways to generate microRNA-like small RNAs: non-canonical pathways for microRNA production.
Miyoshi K, Miyoshi T, Siomi H.
Mol Genet Genomics. 2010 Aug;284(2):95-103.
Hsc70/Hsp90 chaperone machinery mediates ATP-dependent RISC loading of small RNA duplexes.
Iwasaki S, Kobayashi M, Yoda M, Sakaguchi Y, Katsuma S, Suzuki T, Tomari Y.
Mol Cell. 2010 Jul 30;39(2):292-9.
Mechanism of microRNA-target interaction: molecular dynamics simulations and thermodynamics analysis.
Wang Y, Li Y, Ma Z, Yang W, Ai C.
PLoS Comput Biol. 2010 Jul 29;6(7):e1000866.
Pathogenic LRRK2 negatively regulates microRNA-mediated translational repression.
Gehrke S, Imai Y, Sokol N, Lu B.
Nature. 2010 Jul 29;466(7306):637-41.
Microvesicles derived from adult human bone marrow and tissue specific mesenchymal stem cells shuttle selected pattern of miRNAs.
Collino F, Deregibus MC, Bruno S, Sterpone L, Aghemo G, Viltono L, Tetta C, Camussi G.
PLoS One. 2010 Jul 27;5(7):e11803.
Signal transducers and activators of transcription-1 (STAT1) regulates microRNA transcription in interferon gamma-stimulated HeLa cells.
Wang G, Wang Y, Teng M, Zhang D, Li L, Liu Y.
PLoS One. 2010 Jul 26;5(7):e11794.
Comment on "Increased MKK4 abundance with replicative senescence is linked to the joint reduction of multiple microRNAs".
Moens U, Shiryaev A, Dumitriu G.
Sci Signal. 2010 Jul 20;3(131):lc1
Adverse interactions between micro-RNAs and target genes from different species.
Tang T, Kumar S, Shen Y, Lu J, Wu ML, Shi S, Li WH, Wu CI.
Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):12935-40.
LIM-domain proteins, LIMD1, Ajuba, and WTIP are required for microRNA-mediated gene silencing.
James V, Zhang Y, Foxler DE, de Moor CH, Kong YW, Webb TM, Self TJ, Feng Y, Lagos D, Chu CY, Rana TM, Morley SJ, Longmore GD,
Bushell M, Sharp TV.
Proc Natl Acad Sci U S A. 2010 Jul 13;107(28):12499-504.
MD simulations of the dsRBP DGCR8 reveal correlated motions that may aid pri-miRNA binding.
Wostenberg C, Noid WG, Showalter SA.
Biophys J. 2010 Jul 7;99(1):248-56.
MicroRNA-340-mediated degradation of microphthalmia-associated transcription factor mRNA is inhibited by the coding region
determinant-binding protein.
Goswami S, Tarapore RS, Teslaa JJ, Grinblat Y, Setaluri V, Spiegelman VS.
J Biol Chem. 2010 Jul 2;285(27):20532-40.
Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases.
Wang D, Wang J, Lu M, Song F, Cui Q.
Bioinformatics. 2010 Jul 1;26(13):1644-50.
MicroRNAs and gene regulatory networks: managing the impact of noise in biological systems.
Herranz H, Cohen SM.
Genes Dev. 2010 Jul 1;24(13):1339-44.
A new twist in the microRNA pathway: Not Dicer but Argonaute is required for a microRNA production.
Bossé GD, Simard MJ.
Cell Res. 2010 Jul;20(7):735-7.
Novel intronic microRNA represses zebrafish myf5 promoter activity through silencing dickkopf-3 gene.
Hsu RJ, Lin CY, Hoi HS, Zheng SK, Lin CC, Tsai HJ.
Nucleic Acids Res. 2010 Jul;38(13):4384-93.
The fate of miRNA* strand through evolutionary analysis: implication for degradation as merely carrier strand or potential regulatory
molecule?
Guo L, Lu Z.
PLoS One. 2010 Jun 30;5(6):e11387.
microRNA evolution in a human transcription factor and microRNA regulatory network.
Qiu C, Wang J, Yao P, Wang E, Cui Q.
BMC Syst Biol. 2010 Jun 29;4:90.
Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi.
Lee HC, Li L, Gu W, Xue Z, Crosthwaite SK, Pertsemlidis A, Lewis ZA, Freitag M, Selker EU, Mello CC, Liu Y.
Mol Cell. 2010 Jun 25;38(6):803-14.
MicroRNA biogenesis via splicing and exosome-mediated trimming in Drosophila.
Flynt AS, Greimann JC, Chung WJ, Lima CD, Lai EC.
Mol Cell. 2010 Jun 25;38(6):900-7.
A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity.
Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA, Giraldez AJ.
Science. 2010 Jun 25;328(5986):1694-8.
Gene-expression forum: Decoy for microRNAs.
Rigoutsos I, Furnari F.
Nature. 2010 Jun 24;465(7301):1016-7.
Molecular biology. Paring miRNAs through pairing.
Pasquinelli AE.
Science. 2010 Jun 18;328(5985):1494-5.
Target RNA-directed trimming and tailing of small silencing RNAs.
Ameres SL, Horwich MD, Hung JH, Xu J, Ghildiyal M, Weng Z, Zamore PD.
Science. 2010 Jun 18;328(5985):1534-9.
Lineage-specific transcriptional regulation of DICER by MITF in melanocytes.
Levy C, Khaled M, Robinson KC, Veguilla RA, Chen PH, Yokoyama S, Makino E, Lu J, Larue L, Beermann F, Chin L, Bosenberg M, Song
JS, Fisher DE.
Cell. 2010 Jun 11;141(6):994-1005.
Secretory mechanisms and intercellular transfer of microRNAs in living cells.
Kosaka N, Iguchi H, Yoshioka Y, Takeshita F, Matsuki Y, Ochiya T.
J Biol Chem. 2010 Jun 4;285(23):17442-52.
A dicer-independent miRNA biogenesis pathway that requires Ago catalysis.
Cheloufi S, Dos Santos CO, Chong MM, Hannon GJ.
Nature. 2010 Jun 3;465(7298):584-9.
Identification of non-coding RNAs embracing microRNA-143/145 cluster.
Iio A, Nakagawa Y, Hirata I, Naoe T, Akao Y.
Mol Cancer. 2010 Jun 2;9:136.
The nuclear export receptor XPO-1 supports primary miRNA processing in C. elegans and Drosophila.
Büssing I, Yang JS, Lai EC, Grosshans H.
EMBO J. 2010 Jun 2;29(11):1830-9.
Argonaute proteins at a glance.
Ender C, Meister G.
J Cell Sci. 2010 Jun 1;123(Pt 11):1819-23.
Microprocessor of microRNAs: regulation and potential for therapeutic intervention.
Beezhold KJ, Castranova V, Chen F.
Mol Cancer. 2010 Jun 1;9:134.
Emerging paradigms of regulated microRNA processing.
Newman MA, Hammond SM.
Genes Dev. 2010 Jun 1;24(11):1086-92.
Regulation of mammalian microRNA expression.
Zhang X, Zeng Y.
J Cardiovasc Transl Res. 2010 Jun;3(3):197-203.
Similarities between Argonautes and the alpha-sarcin-like ribotoxins: Implications for microRNA action.
Pichinuk E, Wreschner DH.
Protein Sci. 2010 Jun;19(6):1272-8.
MicroRNAs, macrocontrol: regulation of miRNA processing.
Slezak-Prochazka I, Durmus S, Kroesen BJ, van den Berg A.
RNA. 2010 Jun;16(6):1087-95.
Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and
tRNA 3' trailers.
Liao JY, Ma LM, Guo YH, Zhang YC, Zhou H, Shao P, Chen YQ, Qu LH.
PLoS One. 2010 May 14;5(5):e10563.
DNA methylation mediated by a microRNA pathway.
Wu L, Zhou H, Zhang Q, Zhang J, Ni F, Liu C, Qi Y.
Mol Cell. 2010 May 14;38(3):465-75.
Posttranscriptional regulation of microRNA biogenesis in animals.
Siomi H, Siomi MC.
Mol Cell. 2010 May 14;38(3):323-32.
The tumor suppressors p53, p63, and p73 are regulators of microRNA processing complex.
Boominathan L.
PLoS One. 2010 May 12;5(5):e10615.
HSP90 protein stabilizes unloaded argonaute complexes and microscopic P-bodies in human cells.
Johnston M, Geoffroy MC, Sobala A, Hay R, Hutvagner G.
Mol Biol Cell. 2010 May 1;21(9):1462-9.
Individual microRNAs (miRNAs) display distinct mRNA targeting "rules".
Wang WX, Wilfred BR, Xie K, Jennings MH, Hu YH, Stromberg AJ, Nelson PT.
RNA Biol. 2010 May-Jun;7(3):373-80.
Characteristic comparison between two types of miRNA precursors in metazoan species.
Zhang X, Song X, Wang H.
Biosystems. 2010 May;100(2):144-9.
A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon.
Gimpel M, Heidrich N, Mäder U, Krügel H, Brantl S.
Mol Microbiol. 2010 May;76(4):990-1009.
microRNA/Argonaute 2 regulates nonsense-mediated messenger RNA decay.
Choe J, Cho H, Lee HC, Kim YK.
EMBO Rep. 2010 May;11(5):380-6.
Expansion of the miRNA pathway in the hemipteran insect Acyrthosiphon pisum.
Jaubert-Possamai S, Rispe C, Tanguy S, Gordon K, Walsh T, Edwards O, Tagu D.
Mol Biol Evol. 2010 May;27(5):979-87.
Atypical transcription of microRNA gene fragments.
Song Gao J, Zhang Y, Li M, Tucker LD, Machan JT, Quesenberry P, Rigoutsos I, Ramratnam B.
Nucleic Acids Res. 2010 May;38(9):2775-87.
Differential regulation of microRNA stability.
Bail S, Swerdel M, Liu H, Jiao X, Goff LA, Hart RP, Kiledjian M.
RNA. 2010 May;16(5):1032-9.
Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs.
Welker NC, Pavelec DM, Nix DA, Duchaine TF, Kennedy S, Bass BL.
RNA. 2010 May;16(5):893-903.
Role of GW182 proteins and PABPC1 in the miRNA pathway: a sense of déjà vu.
Tritschler F, Huntzinger E, Izaurralde E.
Nat Rev Mol Cell Biol. 2010 May;11(5):379-84.
Probing the transition state for nucleic acid hybridization using phi-value analysis.
Kim J, Shin JS.
Biochemistry. 2010 Apr 27;49(16):3420-6.
Target mRNA abundance dilutes microRNA and siRNA activity.
Arvey A, Larsson E, Sander C, Leslie CS, Marks DS.
Mol Syst Biol. 2010 Apr 20;6:363.
The code within the code: microRNAs target coding regions.
Forman JJ, Coller HA.
Cell Cycle. 2010 Apr 15;9(8):1533-41.
A splicing-independent function of SF2/ASF in microRNA processing.
Wu H, Sun S, Tu K, Gao Y, Xie B, Krainer AR, Zhu J.
Mol Cell. 2010 Apr 9;38(1):67-77.
MicroRNA-directed siRNA biogenesis in Caenorhabditis elegans.
Corrêa RL, Steiner FA, Berezikov E, Ketting RF.
PLoS Genet. 2010 Apr 8;6(4):e1000903.
Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects.
Lutter D, Marr C, Krumsiek J, Lang EW, Theis FJ.
BMC Genomics. 2010 Apr 6;11:224.
Steroidal regulation of uterine miRNAs is associated with modulation of the miRNA biogenesis components Exportin-5 and Dicer1.
Nothnick WB, Healy C, Hong X.
Endocrine. 2010 Apr;37(2):265-73.
Uncoupling of expression of an intronic microRNA and its myosin host gene by exon skipping.
Bell ML, Buvoli M, Leinwand LA.
Mol Cell Biol. 2010 Apr;30(8):1937-45.
Human tRNA-derived small RNAs in the global regulation of RNA silencing.
Haussecker D, Huang Y, Lau A, Parameswaran P, Fire AZ, Kay MA.
RNA. 2010 Apr;16(4):673-95.
MicroRNA control of signal transduction.
Inui M, Martello G, Piccolo S.
Nat Rev Mol Cell Biol. 2010 Apr;11(4):252-63.
Conserved short sequences in promoter regions of human genome.
Putta P, Mitra CK.
J Biomol Struct Dyn. 2010 Apr;27(5):599-610.
Unified translation repression mechanism for microRNAs and upstream AUGs.
Ajay SS, Athey BD, Lee I.
BMC Genomics. 2010 Mar 5;11:155.
miR-328 functions as an RNA decoy to modulate hnRNP E2 regulation of mRNA translation in leukemic blasts.
Eiring AM, Harb JG, Neviani P, Garton C, Oaks JJ, Spizzo R, Liu S, Schwind S, Santhanam R, Hickey CJ, Becker H, Chandler JC, Andino
R, Cortes J, Hokland P, Huettner CS, Bhatia R, Roy DC, Liebhaber SA, Caligiuri MA, Marcucci G, Garzon R, Croce CM, Calin GA, Perrotti
D.
Cell. 2010 Mar 5;140(5):652-65.
A global comparison between nuclear and cytosolic transcriptomes reveals differential compartmentalization of alternative transcript
isoforms.
Chen L.
Nucleic Acids Res. 2010 Mar 1;38(4):1086-97.
MicroRNA targeting in mammalian genomes: genes and mechanisms.
Muljo SA, Kanellopoulou C, Aravind L.
Wiley Interdiscip Rev Syst Biol Med. 2010 Mar-Apr;2(2):148-61.
Small RNA-mediated regulation at the level of transcript stability.
Caron MP, Lafontaine DA, Massé E.
RNA Biol. 2010 Mar;7(2):140-4.
CCR4-NOT deadenylates mRNA associated with RNA-induced silencing complexes in human cells.
Piao X, Zhang X, Wu L, Belasco JG.
Mol Cell Biol. 2010 Mar;30(6):1486-94.
Structure and activity of putative intronic miRNA promoters.
Monteys AM, Spengler RM, Wan J, Tecedor L, Lennox KA, Xing Y, Davidson BL.
RNA. 2010 Mar;16(3):495-505.
Molecular mechanisms that funnel RNA precursors into endogenous small-interfering RNA and microRNA biogenesis pathways in
Drosophila.
Miyoshi K, Miyoshi T, Hartig JV, Siomi H, Siomi MC.
RNA. 2010 Mar;16(3):506-15.
Genomic organization of microRNAs.
Olena AF, Patton JG.
J Cell Physiol. 2010 Mar;222(3):540-5.
Dynamical modeling of microRNA action on the protein translation process.
Zinovyev A, Morozova N, Nonne N, Barillot E, Harel-Bellan A, Gorban AN.
BMC Syst Biol. 2010 Feb 24;4:13.
Many families of C. elegans microRNAs are not essential for development or viability.
Alvarez-Saavedra E, Horvitz HR.
Curr Biol. 2010 Feb 23;20(4):367-73.
Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas.
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Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3906-11.
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Cell. 2010 Feb 19;140(4):445-9.
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Biochem Biophys Res Commun. 2010 Feb 19;392(4):572-6.
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Cell Cycle. 2010 Feb;9(4):645-6.
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries.
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Genome Res. 2010 Feb;20(2):257-64.
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Biochem Soc Trans. 2010 Feb;38(Pt 1):242-51.
Anti-Argonaute RIP-Chip shows that miRNA transfections alter global patterns of mRNA recruitment to microribonucleoprotein complexes.
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RNA. 2010 Feb;16(2):394-404.
Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans.
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Nat Struct Mol Biol. 2010 Feb;17(2):173-9.
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Nat Struct Mol Biol. 2010 Feb;17(2):144-50.
Structural insights into the human GW182-PABC interaction in microRNA-mediated deadenylation.
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Nat Struct Mol Biol. 2010 Feb;17(2):238-40.
The mechanism of eukaryotic translation initiation and principles of its regulation.
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Nat Rev Mol Cell Biol. 2010 Feb;11(2):113-27.
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Curr Biol. 2010 Jan 26;20(2):R68-70.
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Cell Cycle. 2010 Jan 15;9(2):213-4.
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Genetika. 2010 Jan;46(1):5-13.
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Trends Cell Biol. 2010 Jan;20(1):52-61.
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Nucleic Acids Res. 2010 Jan;38(1):1-16.
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Nucleic Acids Res. 2010 Jan;38(2):534-47.
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Nat Struct Mol Biol. 2010 Jan;17(1):17-23.
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Nat Struct Mol Biol. 2010 Jan;17(1):24-30.
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Nat Struct Mol Biol. 2010 Jan;17(1):5-10.
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Mol Cell Biol. 2010 Jan;30(1):33-42.
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J Virol. 2010 Jan;84(2):695-703.
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