Mechanism
MicroRNAs and gene regulatory networks: managing the impact of noise in biological systems.
Herranz H, Cohen SM.
Genes Dev. 2010 Jul 1;24(13):1339-44.
A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity.
Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA, Giraldez AJ.
Science. 2010 Jun 25;328(5986):1694-8.
Gene-expression forum: Decoy for microRNAs.
Rigoutsos I, Furnari F.
Nature. 2010 Jun 24;465(7301):1016-7.
Molecular biology. Paring miRNAs through pairing.
Pasquinelli AE.
Science. 2010 Jun 18;328(5985):1494-5.
Target RNA-directed trimming and tailing of small silencing RNAs.
Ameres SL, Horwich MD, Hung JH, Xu J, Ghildiyal M, Weng Z, Zamore PD.
Science. 2010 Jun 18;328(5985):1534-9.
Lineage-specific transcriptional regulation of DICER by MITF in melanocytes.
Levy C, Khaled M, Robinson KC, Veguilla RA, Chen PH, Yokoyama S, Makino E, Lu J, Larue L, Beermann F, Chin L, Bosenberg M, Song
JS, Fisher DE.
Cell. 2010 Jun 11;141(6):994-1005.
Secretory mechanisms and intercellular transfer of microRNAs in living cells.
Kosaka N, Iguchi H, Yoshioka Y, Takeshita F, Matsuki Y, Ochiya T.
J Biol Chem. 2010 Jun 4;285(23):17442-52.
A dicer-independent miRNA biogenesis pathway that requires Ago catalysis.
Cheloufi S, Dos Santos CO, Chong MM, Hannon GJ.
Nature. 2010 Jun 3;465(7298):584-9.
The nuclear export receptor XPO-1 supports primary miRNA processing in C. elegans and Drosophila.
Büssing I, Yang JS, Lai EC, Grosshans H.
EMBO J. 2010 Jun 2;29(11):1830-9.
Emerging paradigms of regulated microRNA processing.
Newman MA, Hammond SM.
Genes Dev. 2010 Jun 1;24(11):1086-92.
MicroRNAs, macrocontrol: regulation of miRNA processing.
Slezak-Prochazka I, Durmus S, Kroesen BJ, van den Berg A.
RNA. 2010 Jun;16(6):1087-95.
DNA methylation mediated by a microRNA pathway.
Wu L, Zhou H, Zhang Q, Zhang J, Ni F, Liu C, Qi Y.
Mol Cell. 2010 May 14;38(3):465-75.
Posttranscriptional regulation of microRNA biogenesis in animals.
Siomi H, Siomi MC.
Mol Cell. 2010 May 14;38(3):323-32.
Expansion of the miRNA pathway in the hemipteran insect Acyrthosiphon pisum.
Jaubert-Possamai S, Rispe C, Tanguy S, Gordon K, Walsh T, Edwards O, Tagu D.
Mol Biol Evol. 2010 May;27(5):979-87.
Atypical transcription of microRNA gene fragments.
Song Gao J, Zhang Y, Li M, Tucker LD, Machan JT, Quesenberry P, Rigoutsos I, Ramratnam B.
Nucleic Acids Res. 2010 May;38(9):2775-87.
Differential regulation of microRNA stability.
Bail S, Swerdel M, Liu H, Jiao X, Goff LA, Hart RP, Kiledjian M.
RNA. 2010 May;16(5):1032-9.
Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs.
Welker NC, Pavelec DM, Nix DA, Duchaine TF, Kennedy S, Bass BL.
RNA. 2010 May;16(5):893-903.
Role of GW182 proteins and PABPC1 in the miRNA pathway: a sense of déjà vu.
Tritschler F, Huntzinger E, Izaurralde E.
Nat Rev Mol Cell Biol. 2010 May;11(5):379-84.
Probing the transition state for nucleic acid hybridization using phi-value analysis.
Kim J, Shin JS.
Biochemistry. 2010 Apr 27;49(16):3420-6.
Target mRNA abundance dilutes microRNA and siRNA activity.
Arvey A, Larsson E, Sander C, Leslie CS, Marks DS.
Mol Syst Biol. 2010 Apr 20;6:363.
A splicing-independent function of SF2/ASF in microRNA processing.
Wu H, Sun S, Tu K, Gao Y, Xie B, Krainer AR, Zhu J.
Mol Cell. 2010 Apr 9;38(1):67-77.
Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects.
Lutter D, Marr C, Krumsiek J, Lang EW, Theis FJ.
BMC Genomics. 2010 Apr 6;11:224.
Uncoupling of expression of an intronic microRNA and its myosin host gene by exon skipping.
Bell ML, Buvoli M, Leinwand LA.
Mol Cell Biol. 2010 Apr;30(8):1937-45.
Human tRNA-derived small RNAs in the global regulation of RNA silencing.
Haussecker D, Huang Y, Lau A, Parameswaran P, Fire AZ, Kay MA.
RNA. 2010 Apr;16(4):673-95.
MicroRNA control of signal transduction.
Inui M, Martello G, Piccolo S.
Nat Rev Mol Cell Biol. 2010 Apr;11(4):252-63.
Conserved short sequences in promoter regions of human genome.
Putta P, Mitra CK.
J Biomol Struct Dyn. 2010 Apr;27(5):599-610.
Unified translation repression mechanism for microRNAs and upstream AUGs.
Ajay SS, Athey BD, Lee I.
BMC Genomics. 2010 Mar 5;11:155.
miR-328 functions as an RNA decoy to modulate hnRNP E2 regulation of mRNA translation in leukemic blasts.
Eiring AM, Harb JG, Neviani P, Garton C, Oaks JJ, Spizzo R, Liu S, Schwind S, Santhanam R, Hickey CJ, Becker H, Chandler JC, Andino
R, Cortes J, Hokland P, Huettner CS, Bhatia R, Roy DC, Liebhaber SA, Caligiuri MA, Marcucci G, Garzon R, Croce CM, Calin GA, Perrotti
D.
Cell. 2010 Mar 5;140(5):652-65.
A global comparison between nuclear and cytosolic transcriptomes reveals differential compartmentalization of alternative transcript
isoforms.
Chen L.
Nucleic Acids Res. 2010 Mar 1;38(4):1086-97.
CCR4-NOT deadenylates mRNA associated with RNA-induced silencing complexes in human cells.
Piao X, Zhang X, Wu L, Belasco JG.
Mol Cell Biol. 2010 Mar;30(6):1486-94.
Structure and activity of putative intronic miRNA promoters.
Monteys AM, Spengler RM, Wan J, Tecedor L, Lennox KA, Xing Y, Davidson BL.
RNA. 2010 Mar;16(3):495-505.
Molecular mechanisms that funnel RNA precursors into endogenous small-interfering RNA and microRNA biogenesis pathways in
Drosophila.
Miyoshi K, Miyoshi T, Hartig JV, Siomi H, Siomi MC.
RNA. 2010 Mar;16(3):506-15.
Genomic organization of microRNAs.
Olena AF, Patton JG.
J Cell Physiol. 2010 Mar;222(3):540-5.
Dynamical modeling of microRNA action on the protein translation process.
Zinovyev A, Morozova N, Nonne N, Barillot E, Harel-Bellan A, Gorban AN.
BMC Syst Biol. 2010 Feb 24;4:13.
Many families of C. elegans microRNAs are not essential for development or viability.
Alvarez-Saavedra E, Horvitz HR.
Curr Biol. 2010 Feb 23;20(4):367-73.
Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas.
Ibrahim F, Rymarquis LA, Kim EJ, Becker J, Balassa E, Green PJ, Cerutti H.
Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3906-11.
Lin28: A microRNA regulator with a macro role.
Viswanathan SR, Daley GQ.
Cell. 2010 Feb 19;140(4):445-9.
Self-complementary sequence context in mature miRNAs.
Maiti M, Nauwelaerts K, Lescrinier E, Schuit FC, Herdewijn P.
Biochem Biophys Res Commun. 2010 Feb 19;392(4):572-6.
New messages in the nuclear envelope.
Dauer WT, Worman HJ.
Cell Cycle. 2010 Feb;9(4):645-6.
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries.
de Hoon MJ, Taft RJ, Hashimoto T, Kanamori-Katayama M, Kawaji H, Kawano M, Kishima M, Lassmann T, Faulkner GJ, Mattick JS, Daub
CO, Carninci P, Kawai J, Suzuki H, Hayashizaki Y.
Genome Res. 2010 Feb;20(2):257-64.
On track with P-bodies.
Kulkarni M, Ozgur S, Stoecklin G.
Biochem Soc Trans. 2010 Feb;38(Pt 1):242-51.
Anti-Argonaute RIP-Chip shows that miRNA transfections alter global patterns of mRNA recruitment to microribonucleoprotein complexes.
Wang WX, Wilfred BR, Hu Y, Stromberg AJ, Nelson PT.
RNA. 2010 Feb;16(2):394-404.
Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans.
Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW.
Nat Struct Mol Biol. 2010 Feb;17(2):173-9.
Allosteric regulation of Argonaute proteins by miRNAs.
Djuranovic S, Zinchenko MK, Hur JK, Nahvi A, Brunelle JL, Rogers EJ, Green R.
Nat Struct Mol Biol. 2010 Feb;17(2):144-50.
Structural insights into the human GW182-PABC interaction in microRNA-mediated deadenylation.
Jinek M, Fabian MR, Coyle SM, Sonenberg N, Doudna JA.
Nat Struct Mol Biol. 2010 Feb;17(2):238-40.
The mechanism of eukaryotic translation initiation and principles of its regulation.
Jackson RJ, Hellen CU, Pestova TV.
Nat Rev Mol Cell Biol. 2010 Feb;11(2):113-27.
MicroRNA processing: battle of the bulge.
Meyers BC, Simon SA, Zhai J.
Curr Biol. 2010 Jan 26;20(2):R68-70.
miR-449 regulates CDK-Rb-E2F1 through an auto-regulatory feedback circuit.
Feng M, Yu Q.
Cell Cycle. 2010 Jan 15;9(2):213-4.
NFkappaB p50-CCAAT/enhancer-binding protein beta (C/EBPbeta)-mediated transcriptional repression of microRNA let-7i following
microbial infection.
O'Hara SP, Splinter PL, Gajdos GB, Trussoni CE, Fernandez-Zapico ME, Chen XM, LaRusso NF.
J Biol Chem. 2010 Jan 1;285(1):216-25.
[RNA editing in eukaryotic genome expression]
Pankratova EV, Stepchenko AG.
Genetika. 2010 Jan;46(1):5-13.
Nuclear networking fashions pre-messenger RNA and primary microRNA transcripts for function.
Pawlicki JM, Steitz JA.
Trends Cell Biol. 2010 Jan;20(1):52-61.
Sequence-non-specific effects of RNA interference triggers and microRNA regulators.
Olejniczak M, Galka P, Krzyzosiak WJ.
Nucleic Acids Res. 2010 Jan;38(1):1-16.
Integrative analysis of the human cis-antisense gene pairs, miRNAs and their transcription regulation patterns.
Grinchuk OV, Jenjaroenpun P, Orlov YL, Zhou J, Kuznetsov VA.
Nucleic Acids Res. 2010 Jan;38(2):534-47.
ATP-dependent human RISC assembly pathways.
Yoda M, Kawamata T, Paroo Z, Ye X, Iwasaki S, Liu Q, Tomari Y.
Nat Struct Mol Biol. 2010 Jan;17(1):17-23.
Loqs and R2D2 act sequentially in the siRNA pathway in Drosophila.
Marques JT, Kim K, Wu PH, Alleyne TM, Jafari N, Carthew RW.
Nat Struct Mol Biol. 2010 Jan;17(1):24-30.
MicroRNA assassins: factors that regulate the disappearance of miRNAs.
Kai ZS, Pasquinelli AE.
Nat Struct Mol Biol. 2010 Jan;17(1):5-10.
miRGen 2.0: a database of microRNA genomic information and regulation.
Alexiou P, Vergoulis T, Gleditzsch M, Prekas G, Dalamagas T, Megraw M, Grosse I, Sellis T, Hatzigeorgiou AG.
Nucleic Acids Res. 2010 Jan;38(Database issue):D137-41.
Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway.
Ghildiyal M, Xu J, Seitz H, Weng Z, Zamore PD.
RNA. 2010 Jan;16(1):43-56.
Poly(A)-binding protein modulates mRNA susceptibility to cap-dependent miRNA-mediated repression.
Walters RW, Bradrick SS, Gromeier M.
RNA. 2010 Jan;16(1):239-50.
Cwc23, an essential J protein critical for pre-mRNA splicing with a dispensable J domain.
Sahi C, Lee T, Inada M, Pleiss JA, Craig EA.
Mol Cell Biol. 2010 Jan;30(1):33-42.
In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA expression provides insights into the mammalian
microRNA-processing machinery.
Umbach JL, Cullen BR.
J Virol. 2010 Jan;84(2):695-703.
Ago2 and GW182 expression in mouse preimplantation embryos: a link between microRNA biogenesis and GW182 protein synthesis.
Shen XH, Han YJ, Cui XS, Kim NH.
Reprod Fertil Dev. 2010;22(4):634-43.
Biochemical principles of small RNA pathways.
Liu Q, Paroo Z.
Annu Rev Biochem. 2010;79:295-319.
Regulation of mRNA translation and stability by microRNAs.
Fabian MR, Sonenberg N, Filipowicz W.
Annu Rev Biochem. 2010;79:351-79.
Understanding how miRNAs post-transcriptionally regulate gene expression.
Fabian MR, Sundermeier TR, Sonenberg N.
Prog Mol Subcell Biol. 2010;50:1-20.
Translational control of endogenous microRNA target genes in C. elegans.
Hurschler BA, Ding XC, Grosshans H.
Prog Mol Subcell Biol. 2010;50:21-40.
The inhibitory effect of apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3G (APOBEC3G) and its family members on the
activity of cellular microRNAs.
Zhang H.
Prog Mol Subcell Biol. 2010;50:71-83.
MicroRNA-mediated mRNA deadenylation and repression of protein synthesis in a mammalian cell-free system.
Wakiyama M, Yokoyama S.
Prog Mol Subcell Biol. 2010;50:85-97.
miRNA Effects on mRNA closed-loop formation during translation initiation.
Beilharz TH, Humphreys DT, Preiss T.
Prog Mol Subcell Biol. 2010;50:99-112.
miRNA regulation of the translational machinery. Preface.
Rhoads RE.
Prog Mol Subcell Biol. 2010;50:v-vi.
Analysis of miRNA Modifications.
Yu B, Chen X.
Methods Mol Biol. 2010;592:137-48.
MicroRNA promoter analysis.
Megraw M, Hatzigeorgiou AG.
Methods Mol Biol. 2010;592:149-61.
Processing of miRNA precursors.
Kurihara Y, Watanabe Y.
Methods Mol Biol. 2010;592:231-41.